Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1904 ATGGCTCCGCCGCCTCCGGTGGAACACAACGCTGACTCCTCCACCACCGCCTCTGTCGTCGCAGACTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACCAATCCATCGACGATGTTATCTCCTGGAACGACGACGGATCAACGTTCATCGTGTGGAACCCTACCGTCTTTGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGATTCAGGAAGGTTGTACCTGATCGGTGGGAATTCTCAAACGACTGTTTCCGTCGAGGCGAGAAGCAGCTTCTGAGCGAAATTCAACGGAGGAAGATCTCGTTACCGGTGGCTTCGACGTCGCCGTCTACGACGGCTCCGGCAACGGTTTCTGTTCCTTCGTCGATGCCGTTGACTGCTATTCCGATCATATCGCCGTCGAACTCCGGCGAGGAGCAGGTGATATCGTCGAACTCGTCACCGTCGCTCGCGCCGGCGGAGCTCATCGACGAGAACGAGAGGCTTAGGAAAGAGAACGTTCAGTTGACAAAAGAGCTCGCGGAGATGAGATCGCTCTGCAATAATATATATGCTCTCATGTCAAATTACGCGAACGCCAACGGTAACGCAAGTTACCAAACGGACGGCGGTGCTGGTGGCGCGCAGGGAAGTAGGGAGTCCGGCATGACGGCGGTGAGGCCGCTCGATTTGATGCCGACGAAACGGATCTCCGGTGAGGACGCGGCGGAGTTGAATCCGAAACTGTTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGGAGCGGTGGAGAAGAAGGAGGTGGACCAAAGAAAGATACGCTGCTGCGTCTGCACCACCCAGGTCCTGGAGACGTCAAATCTGAACCGTTGGATTGCCAAAACCAGCTCGAGAATCAGGAAGCACCGTGGTTGAGTCAGTGTCATATAGCAAATCAGAGGGTCTGTAATTGA 1008 0.5476 MAPPPPVEHNADSSTTASVVADSQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKQLLSEIQRRKISLPVASTSPSTTAPATVSVPSSMPLTAIPIISPSNSGEEQVISSNSSPSLAPAELIDENERLRKENVQLTKELAEMRSLCNNIYALMSNYANANGNASYQTDGGAGGAQGSRESGMTAVRPLDLMPTKRISGEDAAELNPKLFGVAIGAKRAREGGGSGGEEGGGPKKDTLLRLHHPGPGDVKSEPLDCQNQLENQEAPWLSQCHIANQRVCN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1904 335 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g1904 335 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g1904 335 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g1904 335 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Vra1g1904 335 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 320 IPR027725 -
Vra1g1904 335 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 10 320 - -
Vra1g1904 335 Coils Coil 181 201 - -
Vra1g1904 335 Gene3D - 23 121 IPR036388 -
Vra1g1904 335 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g1904 335 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g1904 335 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g1904 335 MobiDBLite consensus disorder prediction 274 306 - -
Vra1g1904 335 MobiDBLite consensus disorder prediction 288 304 - -
Vra1g1904 335 CDD bZIP 175 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1904 Vra-Chr1 36170347 36171919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1904 21 335 HSF AT5G62020 48.649 7.34e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra1g1904 HSF_DNA-bind 4.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1904 K09419 - gmx:100812267 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1904 1 36170347 36171919 Vra8g2261 8 40865929 40867394 PCT