Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1900 ATGACGAACTTTCTGAATGGAACCATCTCCTCGTGGTTCATCATTCCCATGCTAGCTTTCTTCATCTCACTAGCCTTTCCCACCATATTCAATCTTCTATCCAAACTCAACTCAAAATCAGCAAAAAACTTACCACCATCTCCACCAAAGCTTCCACTAATAGGAAATCTCCACCAACTTGGCAACCTCACTCACCACACTCTCCAATCCTTTGCCCAAACCTATGGCCCTATGATGGTGCTCCACTTCGGGAAGGTGCCAGTTCTTGTGGTCTCAAACGCGGAAGCAGCACGTGAGATTCTGAAAAACCAAGACCACGTTTTCTGTAACAGACCACATCGTAAGATGTTTGATATCTTCTGGTATGGTTCGAGAGATGTGGCATCTGCTCCATATGGGCACTACTGGAGGCAGGTGAAGAGTATCTGTGTTTTGCATCTGCTGAGTGGGAAAAAAGTTCAGTGCTTTCGTAGAGTGAGGGAAGAGGAAGTTATGATAATGGTAGAGAAAGTTATGGAGAATTGTAGTTCTCAGAAAGCAGTGAACTTAACTGATTTGTTCTCTGATGTGACGAATGATATAGTGTGTAGGAGTGTTATAGGAAGAAGATATGAAGGGAGTGTGCTTAGGGAGCCAATGAGCAAGTTGGAAGAGTTTTTGGGGGCTTCTGTTATAGGGGATTACATACCTTGGCTTGATTGGGTTGGAAGAGTTAATGGAATGTATGGTAGGGCAAAGAGAGTAGCTAAACAGCTAGATGAATTTTTGGATGAGGTTGTCGATGAGCATGTTCTTATGAGAAATCATGATGGTGATGTTGTTAATGGTGGCGATATGCAGAATGATTTTGTGGATATCTTGCTGGAGATTCAGAAAACAAGCTCCACGACAGATTTTCAGGTTGATAGGACTATCATGAAGGCTTTGATCATGGATATGTTTGGTGCAGGAACTGATACCACCCTTGCTGTGTTAGAATGGGCTATGACAGAGCTGTTGAGACATCCAAATGTGATGCAGAAACTGCAAGATGAGGTGAGAAGTGTGGCTAGGGCAAAGACTCATGTAACTGAGGAGGATTTGAATGAGATGCCATACTTGAAAGCAGTGATCAAAGAGATTCTGAGATTGCATCCACCATCTCCTATACTGATTCCAAGGGAATCCATGCAAGATACCAAAGTGATGGGTTATGATATTGCAGTTGGGACACAGGTATTGGTCAATGCTTGGGCAATTTCTACAGACCCTTCCTATTGGGATGAACCTCTTCAGTTTCAACCAGAGAGATTCTTGAAGAGTTCAATAGATATCAAAGGGCATGATTTCCATTTGATTCCATTTGGAGCAGGAAGAAGGGGTTGTCCAGGAATAGGTTTTGCCATGGTTGTCAATGAACTGGTTCTTGCAAACACTGTGCACCAGTTTGATTGGACTGTGCCTGCTGGAGTGCTGGGGGACCAGACATTTTGCTTGTCTGAAACTACTGGATTGACTGTTCATAGAAAACTACCTCTTCTTGCACTTGCATCTCCTCATGTGAAGTGTTCCAAGTAA 1557 0.4322 MTNFLNGTISSWFIIPMLAFFISLAFPTIFNLLSKLNSKSAKNLPPSPPKLPLIGNLHQLGNLTHHTLQSFAQTYGPMMVLHFGKVPVLVVSNAEAAREILKNQDHVFCNRPHRKMFDIFWYGSRDVASAPYGHYWRQVKSICVLHLLSGKKVQCFRRVREEEVMIMVEKVMENCSSQKAVNLTDLFSDVTNDIVCRSVIGRRYEGSVLREPMSKLEEFLGASVIGDYIPWLDWVGRVNGMYGRAKRVAKQLDEFLDEVVDEHVLMRNHDGDVVNGGDMQNDFVDILLEIQKTSSTTDFQVDRTIMKALIMDMFGAGTDTTLAVLEWAMTELLRHPNVMQKLQDEVRSVARAKTHVTEEDLNEMPYLKAVIKEILRLHPPSPILIPRESMQDTKVMGYDIAVGTQVLVNAWAISTDPSYWDEPLQFQPERFLKSSIDIKGHDFHLIPFGAGRRGCPGIGFAMVVNELVLANTVHQFDWTVPAGVLGDQTFCLSETTGLTVHRKLPLLALASPHVKCSK* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1900 518 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 SUPERFAMILY Cytochrome P450 45 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 Coils Coil 339 359 - -
Vra1g1900 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Vra1g1900 518 PANTHER CYTOCHROME P450 71B11-RELATED 22 512 - -
Vra1g1900 518 PANTHER CYTOCHROME P450 FAMILY PROTEIN 22 512 - -
Vra1g1900 518 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 Pfam Cytochrome P450 45 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1900 518 Gene3D Cytochrome P450 32 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1900 Vra-Chr1 36059249 36063214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1900 35 511 Cytochrome P450 AT3G48310 48.643 4.68e-171 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1900 - - gmx:100813357 823.542