Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1894 ATGTCCACTTCTCTGCATGAAAACTCTTATTCAATCTGGTTTTTCCTCCCAATAGCTACCTTAATCATCTTCTTTTTACGTACTGTCATCAAATCCAATCATAATTTCAACTCTGCAATGGCCAGAAAAACCTCACCACCATCTCCTCCAAAGCTTCCAATAATAGGAAATCTCCACCAACTTGGCACTCTCGTTCACCGAACTCTCCATTCCTTTGCTCAAACCTATGGCCCTTTAATGTTACTTCACTTTGGAAAGGTGCCAGTTCTTGTGGTCTCAACGGCCGAGGTAGCTCGTGAGGTTATGAAAACCCATGACCTTGTTTTCTCCAACAGACCACATCGTAAGATGTTTGATATCTTCTTCTACGATTCCAAAGATGTGGCATGTACTCCATACGGCAACTACTGGAGGCAGATAAGGAGTATATGTGTCTTGCATCTTCTCAGTGCAAAAAAGGTTAAATCCTTTGGTGCAGTGAGAGAAGAGGAAATCTCCATAATGATGGATAAGATTAAGCAGTGTTGTTCCTCTGTGACGCCTGTGAATTTAACTGATTTATTTTCAACAGTCACAAATAACATAGTGAGCAGAGCTGCTCTCGGAAGGAGATACAGTGGAGGAAAAGGGTGTAAGTTTTGGGAGCCAATGAATGAGATGATGAAGATGTTGGGTGCTCCAGTTATAGGGGACTGCATACCTTGGCTTGATTGGGTAGGAAGAGTTAATGGAATGTATGGTAGGGCAAAGAGACTGGCTAAACAGCTTGATGAATTTTTTGATGAAGTTGTTGATGAGCATGTAAGCAGGAGAGGGCATGATGTGCATGATGGTAATTATGATGATGATGATGAACAGAATGATTTGGTGGACATTTTGCTGAGGATCCAAAAGACAAACGCCTTGGGGTTTCAGATCGATAAAACAATCATAAAGGCTATAATCCAGGATATGTTTGTCGGAGGCACTGAAACTGGCTCCACAAGCCTAGGATGGATAATGACAGAACTCTTGAGGCACCCAAGTGTGATGCAGAAACTAAAAGATGAGATAAGGAATGTGGTTAGTGGTAGAACTCGCATAACTGAGGAAGATTTAAACAGCATGCCTTATTTGAAAGCAGTGATTAAAGAAAGTTTTCGATTACATCCCCCAGCTCCCTTGTTGCTTCCAAGGGAATCCATGAAAGATGCCAAAGTAATGGGCTATGACATTGCAGCAGGCACACAAGTAATAGTTAATGCTTGGGCAATAGCAAGAGATCCTTGTTACTGGGAAAAAGCTGAAGAGTTTGAAGCAGAAAGATTCTTAAAGAGTTCAATAGATGTGAAAGGACATNATTTTGAAGTGATACCATTTGGAGCAGGAAGAAGGGGTTGTCCAGGAATGATGTTTGCCATGAATGTGATTGAATTGGTCATAGCAAACCTTGTTCATCAGTTTGATTGGGAAGTGCCAGGTGGAGTAGTGGGAGATCAGACACTCGACATGACTGAATCTGCAGGGCTGACCAGTGGTAGAAAATTTCCTCTCATAGCATTTGCCTCTTACCATGCATAA 1560 0.4179 MSTSLHENSYSIWFFLPIATLIIFFLRTVIKSNHNFNSAMARKTSPPSPPKLPIIGNLHQLGTLVHRTLHSFAQTYGPLMLLHFGKVPVLVVSTAEVAREVMKTHDLVFSNRPHRKMFDIFFYDSKDVACTPYGNYWRQIRSICVLHLLSAKKVKSFGAVREEEISIMMDKIKQCCSSVTPVNLTDLFSTVTNNIVSRAALGRRYSGGKGCKFWEPMNEMMKMLGAPVIGDCIPWLDWVGRVNGMYGRAKRLAKQLDEFFDEVVDEHVSRRGHDVHDGNYDDDDEQNDLVDILLRIQKTNALGFQIDKTIIKAIIQDMFVGGTETGSTSLGWIMTELLRHPSVMQKLKDEIRNVVSGRTRITEEDLNSMPYLKAVIKESFRLHPPAPLLLPRESMKDAKVMGYDIAAGTQVIVNAWAIARDPCYWEKAEEFEAERFLKSSIDVKGHXFEVIPFGAGRRGCPGMMFAMNVIELVIANLVHQFDWEVPGGVVGDQTLDMTESAGLTSGRKFPLIAFASYHA* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1894 519 Gene3D Cytochrome P450 33 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PANTHER CYTOCHROME P450 FAMILY PROTEIN 23 517 - -
Vra1g1894 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Vra1g1894 519 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 PANTHER CYTOCHROME P450 71B11-RELATED 23 517 - -
Vra1g1894 519 SUPERFAMILY Cytochrome P450 46 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1894 519 Pfam Cytochrome P450 46 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1894 Vra-Chr1 36011736 36013836 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1894 42 516 Cytochrome P450 AT3G48310 49.580 1.44e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1894 - - gmx:100806940 741.495