Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1885 ATGAACATCATAGTACTCTTCATTTTCCTCCCATCATTGCTTTCCTCAGTTTCCTGCACCCCACGCGGTAAATCCTCTTCACCGGAAACGCTTAATGAGGCCGCCGTCAAAGCAACGCTTTTCATGTCACTCGTCATCTTCGTTTTCGCCCTTCTCATCACCGCATTCTGCTTCGTCTTCATCCGCTGCATATCCAACAGAAATCACGCCGTTCCACAAGTCAAGCGCGGACTCGACCCGCGCGTCCTCTCCACGTGCCCCGTCATGTCCTACTCCGCGCTAAAACTGAATCACCCCAAAGTGGTGCAAAACGCCCCGTTTCAATGCGCCGTGTGTCTGGCGGACTTCGCCGACGACGACACGCTCCGGCTGCTGCCCAAGTGCGGCCACGTGTTCCACACGCGCTGCATCGAGGCGTGGCTGGCTGCGCACGTGACGTGTCCCGTGTGCCGCAGCGACGTGAGCGCGGAAACAGGGGATGCATGTGTGCGGCACGTGCTGGATGAGGAAGATTCTGTAAGAGATTTTGGTGTTCTTGTTAGGTCGCATTCTACGGGTCACTCTTTAGAAGGTTTTTCCATCAAAGTTCCTGAGGAAGTGAAGAAGAAGGTTCTAGAAGATGAGGAATGTGGAAATTCCACGACGATGAATCGTTCAGCAAGTTACGACGTCGTTATGGGGATTGAAGAAGAGGGTGTAGGTAGCACTACTACTCCTACTACTACGACAAATGATAATAATAACAGTTGGATTTTGTGGACTTCTCAACCTATTGATTCTGGTGGTTCGGGGATTCCGAAGTTTTGGGGTGCTTCAATGGTCAGAGAAGATAAAGAAAAAGGGAAAGTGGAAGAGTTTGATGGAAGAACATTTTTTGATTGTGAAGTTTGA 891 0.5039 MNIIVLFIFLPSLLSSVSCTPRGKSSSPETLNEAAVKATLFMSLVIFVFALLITAFCFVFIRCISNRNHAVPQVKRGLDPRVLSTCPVMSYSALKLNHPKVVQNAPFQCAVCLADFADDDTLRLLPKCGHVFHTRCIEAWLAAHVTCPVCRSDVSAETGDACVRHVLDEEDSVRDFGVLVRSHSTGHSLEGFSIKVPEEVKKKVLEDEECGNSTTMNRSASYDVVMGIEEEGVGSTTTPTTTTNDNNNSWILWTSQPIDSGGSGIPKFWGASMVREDKEKGKVEEFDGRTFFDCEV* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1885 296 SUPERFAMILY RING/U-box 102 158 - -
Vra1g1885 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 161 IPR013083 -
Vra1g1885 296 PANTHER RING FINGER DOMAIN-CONTAINING 3 156 - -
Vra1g1885 296 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vra1g1885 296 SMART ring_2 109 150 IPR001841 -
Vra1g1885 296 CDD RING-H2_EL5_like 108 151 - -
Vra1g1885 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 3 156 - -
Vra1g1885 296 Pfam Ring finger domain 108 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1885 Vra-Chr1 35895997 35896887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1885 4 256 Rapid Response to Elicitors AT3G05200 29.653 7.19e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1885 K10664 - gmx:102665105 258.455