Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1884 ATGCTAACCGTTCCTCTGCATTTCCTCTCCACTAACACCACACAAACACAAACCCTTCTTCTCCAAGCTACACAAACTTCAAACCTCACTTCTCTTTTTGACTTCATTCACTTTCTCCCATCTCCTTCAATGCCAACAAATTCTCATCCCCAAAACACCCATTGCTACAAACAATTCCCCATCTTTTTCCCTTTTCTTTCCCAATATAATCCCCCAAACCACACTTCCCAACTTCCTACCTTCACCAAACTCATTCTTCTCTTCACAAACTCTAAATCACACACCCAAATGCCTCAATCAAGTAAATTTCACATCTTTCAAAACACCCTCTTCACATTCTTCTCTCTCTCCTTGCTCCATGCTTCCACAGCTCAAGCACAGTCTTCCATGGAGCCTGTGCCCACATACATCACCCACCACAGCTGGGAGCCCTCCGTTGCCATCACCGTTGGAGCCATCATCTTTGCTCTTCTTGTGATGGGCATCCTCTCCATCTACCTCCGCCGCTGTGCCGAGTCACGGATCATCATCACCACGCAGACCACCACCACCACGGTCCCCTGCTCCTGCGCGCAGGGGATCAACAGGGAACTCCTTAATACCTTTCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAGGGTGAAGAAACGCTCGAATGTGCTGTGTGCTTGACCGATTTCTCAGACAAAGATGCCCTCAGACTCCTCCCCAAATGCAACCACGTGTTCCACCCTCACTGCATTGATTCCTGGCTCGCTTCCCACGTGACGTGCCCTGTTTGCCGCGCGAATCTCAGCCAGGATTCGTGCCAGGTTGCCATAACTGTCCCCACCCTTCATGATGAGGAAGTTTCCGGAAGTGAAGAAACTGTGGCAGAATCAAATCAAAACACTAACACAAACCATGCCGTGAATCAGGTTTGTGTGGGAAGTCCTGCATTGAGTGATGACACTACCAAAACAGTGTGTGTAAGTGAGGAACAATCTTCATCTCCTGATGTTGTTCCTGACTTAGAGACAAACTCAAATTCTGTGACTGGTGATGGGGTGGTTGTTGTTGCTGAGAGGAACTTTTCGAGGTCAAATTCCACTGGGCATTCTCTTGTGGGTGTGGAGAGGTACACGTTGAGGTTACCGGAAGACGTGAGGAGGTACATTCTGGTGAATCATGGAAGGAGTGTTCAGCGTTCTGCTAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAAGAGAGTTATGCCGGGAAGAGGGTGGAGAAGAGGTGGATGATCTGCACGCCGCCATTTGTGGCAAGCCATGGCTGA 1308 0.4901 MLTVPLHFLSTNTTQTQTLLLQATQTSNLTSLFDFIHFLPSPSMPTNSHPQNTHCYKQFPIFFPFLSQYNPPNHTSQLPTFTKLILLFTNSKSHTQMPQSSKFHIFQNTLFTFFSLSLLHASTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMGILSIYLRRCAESRIIITTQTTTTTVPCSCAQGINRELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDSCQVAITVPTLHDEEVSGSEETVAESNQNTNTNHAVNQVCVGSPALSDDTTKTVCVSEEQSSSPDVVPDLETNSNSVTGDGVVVVAERNFSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEESYAGKRVEKRWMICTPPFVASHG* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1884 435 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 102 411 - -
Vra1g1884 435 ProSiteProfiles Zinc finger RING-type profile. 222 264 IPR001841 -
Vra1g1884 435 CDD RING-H2_EL5_like 221 264 - -
Vra1g1884 435 SUPERFAMILY RING/U-box 207 270 - -
Vra1g1884 435 SMART ring_2 222 263 IPR001841 -
Vra1g1884 435 Pfam Ring finger domain 221 264 IPR001841 -
Vra1g1884 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 271 IPR013083 -
Vra1g1884 435 PANTHER RING FINGER DOMAIN-CONTAINING 102 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1884 Vra-Chr1 35860429 35862167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1884 99 389 Rapid Response to Elicitors AT3G05200 36.455 3.82e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1884 K10664 - gmx:100782532 462.225