Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1880 ATGTCCAACGAAACCATTGACCCCTACCACCGTCTCCAAATCCAGCCCAACCCCGATGGCACCTTCACTCGCCTCAACGGTCTCGCAATTCCACACACTGCACCCTCTTCAGACCCCTCTCTTCCCATTCCAGTTCTCACCAAAGACATCACCATCAACCCACACAACCACACATGGCTGCGCTTATTCCTACCACGAACATTACTCTCCTCTTCCAACCCCAACAAGCTTCCTCTCATCCTTTTCTTTCATGGAAGCGGATTCGTGCTGCTCAGTGCAGCTTCCTCCGTGTTCCATGATTTTTGCGTCCAAATTGCCGATTCTGCTCAGGCCATTGTAGCCTCCATCGACTACCGTCTCGCACCGGAGCACCGACTTCCAGCAGCCTACGACGATGGTGCTGAAGCGCTGCGGTGGATTGGAAACTGCAAAGATGAGTGGTTGCGTCAGTACGCTGATTATTCTAAGTGTTATCTTATGGGAAATAGTGCTGGGGCAACTATCGCTTACCAGACAGGTCTACGTGCAGTTGAAGAGGTGAACGATCTTGATCGAGTGAAGATCCAAGGGTTGATATTGCGTCAACCATTCTTCGGTGGAGTGCAGAGGACAGAATCAGAGTTAAGGCTGGAGAATAACCCACTCCTTCCTCTAAGTGTTACGGATTCGATGTGGGAGTTGGCACTACCAACTGGTGCTGATCGTGACCATGAATATTGCAGTGTAAGGGCTGGAAATGGGGTTGAGAAATTTGAGAAGATGAGGGAACTTGGTTGGAGGGTGCTGGTGAGTGGCAACAATGGTGACCCATTGGTGGATCGTGATAAGGAGTTGGTGCAATTGATGGAAGGAAAAGGGGTGAAAGTGGTGAAGGATTTTCAAGAAGAAGGTTGTCATGGAGTTGAACTCTTTGACCCATTGAAAGCAAACCAGTTCATTGATTTGGTTAAACAGTTCATTAATCCAATCTGTGTTTAG 978 0.4877 MSNETIDPYHRLQIQPNPDGTFTRLNGLAIPHTAPSSDPSLPIPVLTKDITINPHNHTWLRLFLPRTLLSSSNPNKLPLILFFHGSGFVLLSAASSVFHDFCVQIADSAQAIVASIDYRLAPEHRLPAAYDDGAEALRWIGNCKDEWLRQYADYSKCYLMGNSAGATIAYQTGLRAVEEVNDLDRVKIQGLILRQPFFGGVQRTESELRLENNPLLPLSVTDSMWELALPTGADRDHEYCSVRAGNGVEKFEKMRELGWRVLVSGNNGDPLVDRDKELVQLMEGKGVKVVKDFQEEGCHGVELFDPLKANQFIDLVKQFINPICV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1880 325 Pfam alpha/beta hydrolase fold 80 301 IPR013094 GO:0016787
Vra1g1880 325 PANTHER RECEPTOR GID1, PUTATIVE-RELATED 3 320 - -
Vra1g1880 325 Gene3D alpha/beta hydrolase 9 323 IPR029058 -
Vra1g1880 325 PANTHER ARYLACETAMIDE DEACETYLASE 3 320 - -
Vra1g1880 325 SUPERFAMILY alpha/beta-Hydrolases 34 321 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1880 Vra-Chr1 35791800 35795858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1880 30 305 Carbohydrate Esterase AT5G16080 35.088 1.36e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1880 - - var:108344974 621.698