Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1873 ATGGGCGTGAAGAACTTGTGGGACCTGCTGGAATCGTGCAAGAAAAGGGTTCCCCTTCACCATCTACAGAACAAGAGGGTGTGCGTAGACCTCTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCCCACGCTTGCGTAAAGGAGAAAGTGTATCTTAAAGGGCTCTTTCACCGACTCCGAGCACTCATTGCGCTCAATTGCAGCCTCGTCTTCGTCACAGATGGATCAATTCCTGCCATAAAATTATCAACCTATAGGCGTCGTTTAAATGTTGGAAAGGAGGTAGCACAAAACGAAACAAAGCTACAGAAAGCGACTTCGTTACAGAGAAATATGGGGTCTGAGTTTTCTTGCATGATTAGAGAGGCTAAAATGTTGGGGATGGCTCTTGGAATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAATGTGCTCTGTTGAATTTTGAATCATTATGTGATGGATGTTTTAGTCTAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGACGGTGGATATGTTGTTTGTTATGAGATGTCAGACATCGAAAGAAAACTTGGACTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTACTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGGGACAAAGATGTTCTTAAAAAAATTGCTTCTGAAGGACTTGGATGGGTGAAGAAAAGAAGAGGAGGCAAGAACGATCTTGGGCTGGATGATAACATTTTAGAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCAGCAGATTCAGATATTGTGCACAAGGCTTTTGCTCAATATACGTTTCAACGTACTAAACTCCAGCAGTTATGTGCCGAATTCTTTCTGTGGCCTTCGGAGAAAACAGATGGGTATATCCTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTAAAGTTGGACTGGACCTTCCTTTACATGAGATCCCTGTAAAGTGTCCTGTCTCAGAAATCATCAAGAGCAGAAGAGTGCATGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATGGATGGACTAGAAACTTCAATAGTCCCTGCAGATCTTATAGAAAGTGCCTGCCGTGAGAAGATTCTGGAGTTTGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATAATCAGAAAAGAAGACCAAAGAAAAAGGAAACTAATTCATCTCTTGCTGAGCTTGATCTAAAGCTTCAGAATTTGTTGCTTGATAATAGTTTGAGAGATCAAGACAACTTCAATGCCTCTGATTCTTCAGAAAGGGTATCAAGGATTGCAGCTCCTATGGCTGATGAAGCTGATCTTAATACAGAAGACTTGTTGCATCTATCACATGACATAGAACACACTGGGTTGATTCAGAATACTAGCAACTTTTATATTACCAATAAGGAAGTTTCCACTACAGGTAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACTTAAAAAATTCAACATTTTCTCAAAATCTCTGCAACCAAGTGACCAAAATATCGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCTGTTGAACACAAGCAGAAAGCCAAGGAACTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1725 0.4081 MGVKNLWDLLESCKKRVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLKGLFHRLRALIALNCSLVFVTDGSIPAIKLSTYRRRLNVGKEVAQNETKLQKATSLQRNMGSEFSCMIREAKMLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSLDSDIFLFGARTVYRDICLGDGGYVVCYEMSDIERKLGLGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKDVLKKIASEGLGWVKKRRGGKNDLGLDDNILEVINAYMKPKCHSADSDIVHKAFAQYTFQRTKLQQLCAEFFLWPSEKTDGYILPSIAERDLRRFANLRLTSSKVGLDLPLHEIPVKCPVSEIIKSRRVHGRECYEVSWEGMDGLETSIVPADLIESACREKILEFEERKAQRKKQNNQKRRPKKKETNSSLAELDLKLQNLLLDNSLRDQDNFNASDSSERVSRIAAPMADEADLNTEDLLHLSHDIEHTGLIQNTSNFYITNKEVSTTGKNEIIDLLSPSPLKKFNIFSKSLQPSDQNIEVINLSDSENDMSVEHKQKAKELRLFLASIRNEIH* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1873 574 SMART xpgn3 1 97 IPR006085 GO:0004518
Vra1g1873 574 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Vra1g1873 574 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Vra1g1873 574 CDD PIN_GEN1 2 200 - -
Vra1g1873 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vra1g1873 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Vra1g1873 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Vra1g1873 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Vra1g1873 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Vra1g1873 574 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Vra1g1873 574 CDD CD_CSD 358 406 - -
Vra1g1873 574 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 463 - -
Vra1g1873 574 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 463 IPR006084 -
Vra1g1873 574 MobiDBLite consensus disorder prediction 408 428 - -
Vra1g1873 574 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Vra1g1873 574 Gene3D - 200 256 - -
Vra1g1873 574 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Vra1g1873 574 SMART xpgineu 130 200 IPR006086 GO:0004518
Vra1g1873 574 Gene3D - 355 423 - -
Vra1g1873 574 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Vra1g1873 574 Gene3D - 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1873 Vra-Chr1 35718379 35735302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1873 1 241 Core DNA Replication Machinery Family AT5G26680 25.095 3.52e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1873 K15338 - gmx:100806919 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1873 1 35718379 35735302 Vra1g1873 1 35718379 35735302 ECH