Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1861 ATGGAAAAGCAGCCATTAGAGAAAGCAAAACCAAAATTCAGAAAAGGGTTATGGTCACCTGAAGAAGATAATAAGCTCAGAAATCATATCCTTAAGCATGGTCATGGATGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGAAATGGAAAAAGTTGCCGACTAAGATGGATTAACTACCTGAGACCTGGATTGAAGAGAGGAGTTTTCAGCAAACATGAAGAAGATACAATCATGGCTCTTCACCACATGTTAGGCAACAAGTGGTCTCAAATAGCACAGCGTTTGCCAGGAAGGACTGATAATGAGATAAAGAATTACTGGCATTCATATCTGAAGAAGAAAGTGATGAAAACTAAGGAAATGGAATCTGGTAAACAAATTGAGCATGCTAGTTCAAGTTCAGACACAGTGGAAAATTCACTCTCTCCACAGAAACTTGCAACTCAAGATCCAAGTTATGCATTGCTACAAAACATGGAAAAAACAGCAACACACTCTGATAACTTTTTCTCACAAAGCTATGACTTTTCCAAAGAGGGTTGTCAGAGTTCCCTACCAAAACTCTTATTTTCTGAGTGGCTTTCAGAGGATCAAGTAAATGGTGCAGGCTCAGTGAATTCTGATGATTCTTTGGTATTGGGAAATGTATTTGATCAAAATTCATCTTTCCAAGAAGCTATAATGCATTTGTTGGAAGGGAACTTTGGTGAAGAGTATCATAATAGTCTAATTCACAGTTCAACCACTGAGGTGTACAATTCACAGCTTAAGCCATCAAATCAAGTGGATGGAAGTGATTTCATTCACTGTATTCCCGGGAATGATTTATGCAGCAATTTCAGCCTAATCAATCGTGCTATGTAA 870 0.3874 MEKQPLEKAKPKFRKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTIMALHHMLGNKWSQIAQRLPGRTDNEIKNYWHSYLKKKVMKTKEMESGKQIEHASSSSDTVENSLSPQKLATQDPSYALLQNMEKTATHSDNFFSQSYDFSKEGCQSSLPKLLFSEWLSEDQVNGAGSVNSDDSLVLGNVFDQNSSFQEAIMHLLEGNFGEEYHNSLIHSSTTEVYNSQLKPSNQVDGSDFIHCIPGNDLCSNFSLINRAM* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1861 289 CDD SANT 71 113 IPR001005 -
Vra1g1861 289 CDD SANT 18 62 IPR001005 -
Vra1g1861 289 MobiDBLite consensus disorder prediction 123 146 - -
Vra1g1861 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vra1g1861 289 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vra1g1861 289 SMART sant 67 115 IPR001005 -
Vra1g1861 289 SMART sant 14 64 IPR001005 -
Vra1g1861 289 MobiDBLite consensus disorder prediction 129 146 - -
Vra1g1861 289 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vra1g1861 289 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vra1g1861 289 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra1g1861 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra1g1861 289 PANTHER MYB DOMAIN PROTEIN 55 1 285 - -
Vra1g1861 289 Gene3D - 15 67 - -
Vra1g1861 289 PANTHER MYB TRANSCRIPTION FACTOR 1 285 - -
Vra1g1861 289 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vra1g1861 289 Gene3D - 70 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1861 Vra-Chr1 35500969 35503888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1861 8 196 MYB Transcription Factor Family AT3G48920 52.910 3.64e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g1861 Myb_DNA-binding 8.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1861 K09422 - gmx:100803537 531.176