Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1840 ATGGAAACCACATCCACACTTACCTATTTCCTCCGCCATGTCGCCGCCAAGTTCCCCTCTCGCCGAGCGCTCTCCGTCGCTGCCAAATTTGACCTCACCCACTCTCGCCTCCATCAACTGGTGGAATCCGCCGCCCAACGGCTGCTCACCGCCGGAATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAATACCGTCGAGTTTGTTATCATGTTTCTAGCCGTTATTCGAGTGCGGGCCACAGCCGCGCCGTTAAACTCGGCTTACACAGACGAAGAGTTCGAGTTTTATTTATCCGACTCCGAGTCCAAGCTTCTCTTAACATCTTCAGAAGGAAACAACGCAGCCCAAGCCGCAGCTTCAAAACTCAAAATAGCTCACGCCACGGCTTCGGTAACCCAAGCCGAGAGTAACGAACCCGAGCTGAGTCTCTCGCTGAGTCAATCCGACTCGGTTAACTCGGTCGATTCGGTTGAGTCAGTGGTTAACGATCCTGATGACGTGGCGCTTTTCCTTCATACATCCGGCACCACAAGCCGACCCAAGGGAGTGCCGCTCACTCAGCACAACTTGCTCTCTTCGGTACAAAACATTAAATCGGTGTACCGACTCACTGAGTCTGACTCGACGGTGATTGTGCTTCCGCTTTTTCACGTGCACGGTTTGATTGCGGGGTTGCTTAGTTCCCTGGCGGCCGGTGCGGCGGTTGCGCTGCCGGCGGCGGGAAGGTTCTCCGCCTCTGCGTTCTGGAAAGACATGGTGAAGTACAACGCCACGTGGTACACTGCGGTCCCCACCATACACCAGATTATACTGGACCGCCACGCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATACGAAGCTGCAGCGCGTCTCTGGCACCGGCTATTTTGGGCAAACTCGAGGAGGCTTTCGGTGCGCCGGTGTTGGAAGCTTATGCGATGACGGAAGCGTCGCATCTCATGGCTTCGAACCCTTTACCACAAGATGGGCCGCACAAAGCCGGGTCGGTTGGAAAGCCCGTGGGACAAGAAATGGTTATTTTGGACCAAACGGGCCGGGTTCAAGAGGCTGAAGTTAGCGGAGAAGTTTGCATTCGTGGCCCCAATGTTACGAAAGGGTATAAAAATAACGTGGATGCCAATACGGCGGCGTTTGAATTTGGTTGGTTCCATACCGGTGATGTTGGCTACTTGGATTCTGATGGTTATTTGCACCTCGTGGGTCGCATCAAGGAACTCATCAACCGTGGAGGCGAAAAGATATCACCAATTGAAGTTGATGCTGTTCTGCTTTCACATCCGGACATTGCACAAGCAGTAGCTTTCGGAGCGCCTGATGCCAAGTACGGTGAAGAGATATATTGTGCGGTTATCCCAAGAGAAGGATCAAACCTTGACGAGGCAGAGGTGCTAAGATATAGCAAGAACAATCTTGCATCCTTCAAAGTTCCCAAAAAGGTCTTCATTACTGATTCTCTGCCCAAGACTGCCACCGGAAAGATTTTGCGTCGTCTTGTGACAGAACACTTTGTCTCTCAAATTTGA 1560 0.5301 METTSTLTYFLRHVAAKFPSRRALSVAAKFDLTHSRLHQLVESAAQRLLTAGIKPGDVVALTFPNTVEFVIMFLAVIRVRATAAPLNSAYTDEEFEFYLSDSESKLLLTSSEGNNAAQAAASKLKIAHATASVTQAESNEPELSLSLSQSDSVNSVDSVESVVNDPDDVALFLHTSGTTSRPKGVPLTQHNLLSSVQNIKSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLAAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHANNPEPVYPRLRFIRSCSASLAPAILGKLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMVILDQTGRVQEAEVSGEVCIRGPNVTKGYKNNVDANTAAFEFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGAPDAKYGEEIYCAVIPREGSNLDEAEVLRYSKNNLASFKVPKKVFITDSLPKTATGKILRRLVTEHFVSQI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1840 519 SUPERFAMILY Acetyl-CoA synthetase-like 5 517 - -
Vra1g1840 519 Gene3D - 415 517 IPR045851 -
Vra1g1840 519 Pfam AMP-binding enzyme 12 421 IPR000873 -
Vra1g1840 519 Gene3D - 6 414 IPR042099 -
Vra1g1840 519 CDD FACL_fum10p_like 19 513 IPR045310 GO:0016874
Vra1g1840 519 PANTHER ACYL-COA SYNTHETASE 1 519 - -
Vra1g1840 519 ProSitePatterns Putative AMP-binding domain signature. 172 183 IPR020845 -
Vra1g1840 519 PANTHER OXALATE--COA LIGASE-LIKE 1 519 - -
Vra1g1840 519 Pfam AMP-binding enzyme C-terminal domain 430 505 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1840 Vra-Chr1 35233696 35237126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1840 2 519 Monolignol Biosynthesis Gene Families AT4G05160 28.839 3.27e-58 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1840 K22133 - gmx:100779306 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1840 1 35233696 35237126 Vra8g2232 8 40646756 40648813 PCT