Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1835 ATGGAGATCTTGGGTTTACCTGGAACACTTGCTTTCTTTTCCTTATTACCCCTTCTTTTCCTCTTCAAACTCACTTTTTCTTGGTGGATTTCTCCCATCTATACTCATCTTAAGCTTAAAAGATGTGGATTTCGAGGGCCACCTCCAACTTTTCCTCTTGGGAACATTCAAGAGATGAAAAAGAAGAACACTGTTACTTCTTCACTTCTGCCTTCTAACCTCACCCATGATATACACTCCACTGTCTTCCCCTACTTTTCTCGCTGGCAAAACTCTCACGGGAAGGTGTTTATCTATTGGTTGGGTACAGAACCGTTTTTGTACATTGCTGATCCTGAGTTTCTGAAGAAAATGTCCACCGAGGTTTTAGCCAAGAAATGGGGAAAACCTAGAGTGTTCAGACATGACAGAGATCCTTTGTTTGGAAATGGTTTGGTTATGGTCGAAGGAAATGAATGGGTTCGTCACCGACATGTTATAGCACCGGCATTTTCTCCTCTTAACCTCAAGGCAATGGCAAGCATGATGAGTGAGTCTACAAATGAAATGATAGAAAGATGGATTGCGCGAATAAACTCGGGTAAATCAGAAATCGATGTGGAAAAAGAGGTTGTGGAAACGGCCGGAGAAATCATTGCAAAAACAAGCTTTGGCATGAAGGGAAGAAATGCAAAGGAAGTGTCTGAAAAACTACGTGCCCTACAAATGTCACTTTTCAGGACAACAAGATACGTAGGAGTCCCATTTGAGAAGTGTTTCAACGTCAAGAAAACCCTAGAGGCCAAGAAACTTGGGAAAGAAATTGATCAACTTTTGCTATCTGTCATAACAACTCGCATGAAATCGATCAAAAGACAAACTCAAGAAGACTTGCTAGGGTTGTTGTTGCAAGGAAATCATCAAGGTGATGGAAAGTTAGGGAAGACATTCACCACTAGAGATTTGTTGGATGAGTGCAAAACTTTCTTCTTTGCTGGCCATGAAACAACTGCATTGGCTATCACATGGACCTTGTTGCTTCTTGCTATGCATGAAGATTGGCAAAACCAGTTGAGAGATGAGATCAGAGAAGTGGTCGGAGATAAAGAACTTGATATCAACGTGCTTGCTGGCTTGAAAAAGATGAAATGGGTGATGAATGAAGTTCTAAGGCTCTACCCAACAGCACCAAATGTGCAAAGGCAAGCAAGAGAAGACATTCAAGTTGACAATTTAAGGATCCCTAATGGCACCAACATGTGGATCGATGTTGTCGCAATGCACCATGATCAAACGTTGTGGGGAAAAGATGTGAATGAGTTTAGACCAGAGAGGTTCATGAACGATGTCAATGGTGGATGCAACCACAAAATGGGATATTTACCATTTGGGTTTGGAGGAAGAACCTGTGTTGGAAGAAACTTGAGCTTCATGGAGTATAAGATAGTGCTAACCCTACTTCTCTCTAAATTTACCTTCAAAGTTTCACCAGGTTATAACCATTCACCCTCTATCATGCTCTCCCTTAGGCCAACCCATGGTCTTCATCTCTTAGTTCAACCCCTTAATTAA 1551 0.4159 MEILGLPGTLAFFSLLPLLFLFKLTFSWWISPIYTHLKLKRCGFRGPPPTFPLGNIQEMKKKNTVTSSLLPSNLTHDIHSTVFPYFSRWQNSHGKVFIYWLGTEPFLYIADPEFLKKMSTEVLAKKWGKPRVFRHDRDPLFGNGLVMVEGNEWVRHRHVIAPAFSPLNLKAMASMMSESTNEMIERWIARINSGKSEIDVEKEVVETAGEIIAKTSFGMKGRNAKEVSEKLRALQMSLFRTTRYVGVPFEKCFNVKKTLEAKKLGKEIDQLLLSVITTRMKSIKRQTQEDLLGLLLQGNHQGDGKLGKTFTTRDLLDECKTFFFAGHETTALAITWTLLLLAMHEDWQNQLRDEIREVVGDKELDINVLAGLKKMKWVMNEVLRLYPTAPNVQRQAREDIQVDNLRIPNGTNMWIDVVAMHHDQTLWGKDVNEFRPERFMNDVNGGCNHKMGYLPFGFGGRTCVGRNLSFMEYKIVLTLLLSKFTFKVSPGYNHSPSIMLSLRPTHGLHLLVQPLN* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1835 516 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 11 510 - -
Vra1g1835 516 PANTHER CYTOCHROME P450 FAMILY MEMBER 11 510 - -
Vra1g1835 516 SUPERFAMILY Cytochrome P450 75 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 Gene3D Cytochrome P450 31 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 Pfam Cytochrome P450 82 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1835 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1835 Vra-Chr1 35018121 35021143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1835 11 515 Cytochrome P450 AT5G52400 58.904 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1835 - - gmx:100810679 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1835 1 35018121 35021143 Vra8g2228 8 40587355 40589726 PCT
Vra8g2229 8 40599678 40601942 Vra1g1835 1 35018121 35021143 PCT