Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1833 ATGTCAGAATCCAAGGAAGAAAATCCTGACTTTCTTCCCAAGTCAAAGCCACAGGAGGAACATGGGTTTGCCATGGATTTTGACATTGGTTTGGAAAGTCTATGGCCCTTGGATCATATATCTTCGGTCTCCAACCCCATGTCTCCTTTTCTCTTATCCACTATCGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGAGAAGCAAATCAGAATTGCAATTGCAGGTAACACAAAAGCAGTAACTGAAAATCCAGTTGAAAATTATGACAACAAGAAATATGTGTCACCATCTCTTGTAGCTGTGCCACCTTCAGAAAATTCAGATGGCTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTCATCAGTATAGAACGGTGTCTCTGAGGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCTGGTAGAGTTTTTCAGCAAAAAATTCCAGAATGGACTCCTAATGTTCAGTACTATTCTAGCAAAGAGTATCAGCGCCTAAACCATGCGCAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCCTGCAGGGCAGTCATGTGTAGCTGTACTGGAGTTGATAATGACTTCACCGAAGATTAACTATGCTCCTGAGGTTGACAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAGATTTTGGAGCATCCATACAATCAGATTTGTAATGAAGATCGCCAGCACGCATTAGCCGAGATTTTGGAGATACTGACAATTGTGTGTGAGACTCATAGTTTGCCTCTAGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTATGCATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCATGAGGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCTCACAACATGTGTTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCCTTAGTACATTATGCTCTCATGTTTGGTTTAACCAGCTCTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGAATATGTGATAGAGTTTTTTCTTCCTCCAAGGATCACAGAATTTAATGAACAAAAGACTTTGTTGAGGTCAATATTAGCCACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGCAGAACTGTTCCATTGAAATTATAGAAGCAAGAAAAGAAAGAGTTCATTTGTGGTTTGAATCAATTCCAATTACTCAATCTTCTATGTCACCACCTAGACATGCCTCCCCAAATATGGGGGAGAGGCTGCCACTGGAGCCATCTGAGCAGCAAACAACAACAGACTTTGATGACATAAATGATGGAAGGAATCTTGGTGATAATACAGATGGGCACATTGATCAGAACACTTCCTTGGAACCCAGAACCAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAAGCTGAGAAATCTATTAGTCTTGATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAACATGGGATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTATCCAAACTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGTGCGTTTGGTTTGAACTCTCTAAGTACTGGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGAGCCCTCCACTTCAAACAAGTTCAACCGCCAAACCTCATTGACCATTAGGCCATCAGAACCTAAGATCAATGAACAAGATTTTGATGCTTCTAGAGCATCAGAAACAAACAGACAAGCTGGGTTGGAAGGTCAGTTTTTAAGTACAAGGACACAAAATCCTGAGAAAGTGATTAATGAAAAAGTTGTGGCCATTCAGGAGATTGGCACTAAAGGTACAACCAGGTTTAGAACTGGGAGTGGCTCAAGTGAAGAGAGTGCAAATCCTTCTCCTCATGGTTCATGCCAAGGTAGTCCCCCAAATGAAATGTCCCCTCCAAAAGATATATTTGTAACAGGCATCAGTGAGCAATGTCTTGTTTTAAGGGGATCACTGGGGTCAACACTGCACTCAACTAGTATACCCAACCATGCAACTGCATATCCTATTCCTAATTTTGTGGAAACCACAGAACCTCAAGAACCATTTGGAGGACAACTACTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGGAATCTATGTCCTTCAACCGATGCTGTTTTGGAGGATCAGGTTCCAGAACCTTACAGGATGAATCCTCAATGTTCTGATTTGGCTCCTGTGCAGCACAGGGATACTAATAACATGACACCTTTTGCAGTTAGGAAAGAGGTGAAGAATGTGACCATTAAGGCAACTTACAGAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGTCATTGTGGAATTAAAAGAAGAAATTGCCAAAAGATTGAAACTAGAGGAGGGAACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCCTCTGGCAGCAACATAATCAGGCTTGTGGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAATGTTGTATATAG 2955 0.4186 MSESKEENPDFLPKSKPQEEHGFAMDFDIGLESLWPLDHISSVSNPMSPFLLSTIEQPFSPVWAFSDVEDEKQIRIAIAGNTKAVTENPVENYDNKKYVSPSLVAVPPSENSDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLRYMFSVDGENDEILGLPGRVFQQKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEILEHPYNQICNEDRQHALAEILEILTIVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSSFAVCLQSSHTGNDEYVIEFFLPPRITEFNEQKTLLRSILATMKPHFQSLKIAAGVELEQNCSIEIIEARKERVHLWFESIPITQSSMSPPRHASPNMGERLPLEPSEQQTTTDFDDINDGRNLGDNTDGHIDQNTSLEPRTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTGSLPIAAGSFSEPSTSNKFNRQTSLTIRPSEPKINEQDFDASRASETNRQAGLEGQFLSTRTQNPEKVINEKVVAIQEIGTKGTTRFRTGSGSSEESANPSPHGSCQGSPPNEMSPPKDIFVTGISEQCLVLRGSLGSTLHSTSIPNHATAYPIPNFVETTEPQEPFGGQLLEGVGSSKDLRNLCPSTDAVLEDQVPEPYRMNPQCSDLAPVQHRDTNNMTPFAVRKEVKNVTIKATYREDIIRFKISLNCVIVELKEEIAKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRLVVHDILPILGSSCESSGDWKCCI* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1833 984 MobiDBLite consensus disorder prediction 507 575 - -
Vra1g1833 984 MobiDBLite consensus disorder prediction 665 709 - -
Vra1g1833 984 ProSiteProfiles PB1 domain profile. 884 966 IPR000270 GO:0005515
Vra1g1833 984 MobiDBLite consensus disorder prediction 556 575 - -
Vra1g1833 984 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Vra1g1833 984 MobiDBLite consensus disorder prediction 735 765 - -
Vra1g1833 984 Pfam PB1 domain 885 965 IPR000270 GO:0005515
Vra1g1833 984 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 979 - -
Vra1g1833 984 MobiDBLite consensus disorder prediction 665 684 - -
Vra1g1833 984 CDD PB1_NLP 885 965 IPR034891 -
Vra1g1833 984 SUPERFAMILY CAD & PB1 domains 884 969 - -
Vra1g1833 984 PANTHER PROTEIN NLP8 3 979 IPR045012 GO:0003700
Vra1g1833 984 Gene3D - 881 965 - -
Vra1g1833 984 SMART PB1_new 884 966 IPR000270 GO:0005515
Vra1g1833 984 MobiDBLite consensus disorder prediction 524 538 - -
Vra1g1833 984 Pfam RWP-RK domain 578 625 IPR003035 -
Vra1g1833 984 MobiDBLite consensus disorder prediction 733 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1833 Vra-Chr1 34948877 34954133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1833 252 979 NLP Transcription Factor Family AT4G24020 51.153 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra1g1833 PB1 2.8e-19 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1833 1 34948877 34954133 Vra8g2224 8 40521825 40526233 PCT