Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1827 ATGGTTTCAAAACAACTTTCAAAGCAACTCGATCGCGTGGGTGGTAAGGTTCGGGTCGTCGCCCGGATCCGTGGGTTTTCAGGTCCTGAGGCTAATTCGGAGGCTGGCACTGCAAGGACTGTGGAGTGGATTTCAGTGAATGGCGAAAATTTGGGTGATGTCTCCATCTCCTTCAGAGACCATCCCAGTCGTTATTTGGTGGACTATTGCTATAAGGAAGATGAAGACAGTGAAATGATATATTCAAGGGAGGTAAAGCCTTTTGTGTCTGCAGCTTTTGAAGGTCATAACAGCACTGTTATTGCACATGGAGCTAGGGGTAGTGGAAAGACCCACATAATTCAGGGCTCTGCTGAGAGGCCGGGTTTGGCAGTGCTTGCTATTGCTGAGTTTCTTCCCATTGCTGAGAAAAATGGGAAATCCATAAGTGTTTCTTTCTATGAGGTTGATCATCAGGAACGGGCCATGGATTTATTAAATCCAGAGAAGCCGCCTATCTTGGTTTTTGAAGATCGTGGTAGAAATCAGTTTAAAGGATTGAGTCAGGTTCTTGTGAAATCAGTTAGTGAATTTCAGAATTTGTACTCCACTGCATGTTTGAGCTTGAAGGGAGCTCCCAAAAAAGGTGGTCAAAGAAGTCATATGGGATTGATTGTGAATGTCGTTTCCCGGAATGAATGTGTAGGAAGTATTGTCAGCAAAATGAATTTTGTTGACTTAGCAGGGTACGAAGATACCAGAAAGAAAAGTAGTGATGGCTCCTGCCTAACTGAGATTAACAAAATTAACAAGTCAATATATGCATTATTGAATATTTGCCATGCTTTGAGTACAAATGAAAGTCATATCCCCTACCGGGAAAGCAAGCTTACGCGCATACTGCAGGATTCTTTGAAGGGAACTAGCAGAATTTTACTGGTTTCATGCTTGAACCCATCATTTTGCCAAGACACTATTTACATGGTAAGCTTGGCTTCACGGTCATATAATCGGATTCATCATCAGACATTCTTAGATTCCACCAAGAAAAGTGTAAGTTCAGCAAATATGAGACAGATACCTAAAAGTGTTTCTGGGACAGCAAAGAAATTTCATCATGGTTCTTCTAAACTAACGAAAGGAAGGAAATTGTTTGATGAAGCTAGTCATTCCACACCTAAGGTTGAGAAGGAAATGGTTACTAAAGCATCAAAGCCTGTGATGGATGACTCATTACCTGAGACTGGAAATCATGACAACTCTGGAGTGGAAACGATAGAGAATAATTTAGCATTGACAAATGTTTCATTTCCGAAGGATGACTTATTTGCAAAAGCTAGTGAGGACATGAAACTTTATCCCCCTTTGGAAAATGGTGATTCGTCCTTGATTGCTAGCAGTGAAGTGGAAAACAATTCCCTAGCAGCTAAGAATGTTTTAGTGGATGGAGATGAAGTGGATGGAGATGAAGGTAAAAAGGAGAATACCCCTTGTATCAATCATTCCTCTGAGTCATTGTCAATAATAGTTCACGAAGGTCATAATTCACCACCCATTAGTTCACAGTTGCGCGATCTTTCCAATAGTCTTAAAATGCTATGCTCTTCAACTTCATCATGCTTGCAAAATTCAGAAAAACAACCCATTCCAGTTGTAGAACCAAAAACTCCTATAATTCAACAGAACATGAGCCAATGGGATGAAATGAATGGCAAAAGTCCTTGGGAGACATTCAGCATGCGAGGCTCTGGGATGAAGAGTTCCATCGTTCAAGAATATCTTAGATTTTTGAACACGGCTGACAAGGAAGAATTAAAAAGATTAAAGGGAATTGGAGACAAAAGGGCTAACTTTATACTTGAACTTCGAGAAGAATCTCCAGAACCTTTCAAAAGTCTAAACGATTTAAAGGACATTGGGCTTTCTGCAAAGCAGATTAAGGGAATGATGAAGAAGGAAGTAGGAGAGCTTTTCAGTGAATTATAA 1965 0.4046 MVSKQLSKQLDRVGGKVRVVARIRGFSGPEANSEAGTARTVEWISVNGENLGDVSISFRDHPSRYLVDYCYKEDEDSEMIYSREVKPFVSAAFEGHNSTVIAHGARGSGKTHIIQGSAERPGLAVLAIAEFLPIAEKNGKSISVSFYEVDHQERAMDLLNPEKPPILVFEDRGRNQFKGLSQVLVKSVSEFQNLYSTACLSLKGAPKKGGQRSHMGLIVNVVSRNECVGSIVSKMNFVDLAGYEDTRKKSSDGSCLTEINKINKSIYALLNICHALSTNESHIPYRESKLTRILQDSLKGTSRILLVSCLNPSFCQDTIYMVSLASRSYNRIHHQTFLDSTKKSVSSANMRQIPKSVSGTAKKFHHGSSKLTKGRKLFDEASHSTPKVEKEMVTKASKPVMDDSLPETGNHDNSGVETIENNLALTNVSFPKDDLFAKASEDMKLYPPLENGDSSLIASSEVENNSLAAKNVLVDGDEVDGDEGKKENTPCINHSSESLSIIVHEGHNSPPISSQLRDLSNSLKMLCSSTSSCLQNSEKQPIPVVEPKTPIIQQNMSQWDEMNGKSPWETFSMRGSGMKSSIVQEYLRFLNTADKEELKRLKGIGDKRANFILELREESPEPFKSLNDLKDIGLSAKQIKGMMKKEVGELFSEL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1827 654 MobiDBLite consensus disorder prediction 375 414 - -
Vra1g1827 654 Gene3D Kinesin motor domain 2 330 IPR036961 -
Vra1g1827 654 PANTHER KINESIN-RELATED 16 651 IPR027640 GO:0003777|GO:0007018
Vra1g1827 654 MobiDBLite consensus disorder prediction 375 397 - -
Vra1g1827 654 Gene3D - 578 650 - -
Vra1g1827 654 PANTHER KINESIN-LIKE PROTEIN KIN-10C 16 651 - -
Vra1g1827 654 Pfam Kinesin motor domain 30 327 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g1827 654 ProSiteProfiles Kinesin motor domain profile. 16 331 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g1827 654 Pfam Helix-hairpin-helix motif 590 637 - -
Vra1g1827 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 328 IPR027417 -
Vra1g1827 654 PRINTS Kinesin heavy chain signature 95 116 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g1827 654 PRINTS Kinesin heavy chain signature 234 252 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g1827 654 PRINTS Kinesin heavy chain signature 283 304 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g1827 654 SUPERFAMILY RuvA domain 2-like 583 645 IPR010994 -
Vra1g1827 654 SMART kinesin_4 14 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1827 Vra-Chr1 34851255 34856645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1827 1 358 Calmodulin-binding Proteins AT5G65930 28.827 5.80e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1827 K10403 - gmx:100809612 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1827 1 34851255 34856645 Vra1g1827 1 34851255 34856645 ECH