Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1826 ATGAATACAGAAGAGAAAGATACGACTGGCGGAGAATCCTCCCTTCATTTTCCCACACCCGATGGCAACTCTGATCATTTGCTTCATTTACTCTATGCTTTAGATTCACAAGGTTGGCCTTTGCTCTCTCCTATGGACATTCAGTTGCAGAAGTGTGACAAATGTTCTCGAGAGTTTTGCTCCCCCATTAACTATAGAAGACATATTCGTGTAGATCATAGGAAGAAAAGTCCTGATAAGGATTTTACAAAAAATAGGGATCTTTTAGAAGCATATTGGGATAAGCTCTCTGCAGAAGAGGCAAATGAAGTTGTATCATTGGAAAATGTGGTGCTGGAGGATATTCTTCAATCTAAACCTTCCAACTTTCCTATATCTTCCCAAGTGTTGTTCAATGTTCTTGATGAGGCCAGTGAAAAAACATGTTTATGCGGAACAGTGGAGTCAGTGCATAAATATGTATTTGTTGGAGATGCGGGAAAAAATGGTCTTGAACTGAAAAACATAATTGCTTTCACAAGTTTCTTGCTAGAACAAAAATTGGTGAAGGCGTGGCTTACTGACAAGGAAGCCGAAGCACTTAGGTGTCAGAAGCAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTCGGAGAGGAAACGCCAGAAAAAGCTTAGACAGAAACAGCAGAAAGCTAGGGAACAAAGACAAAAGGCTGAGGCAGAAATTAACGGCTATATTGAGAGTGCTGTAAAGGCTTTATCACTGACTGAAGCATCTTTAGATACGCAAAATGTTGAAGCTCATAATCCAAATGCATTTTCAGATAACGTAGCCTCACCTGTACCTCCCCAATATGTTGACACCAATAAGGAAATAAATGAGGATACTCGTTCAGAGTATGATACTATCGTTGATCAGCATCTTGAGAGATTGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAATCCAACCATGATAACAAGGCATCAGCTATTGTCAGTGGTAGTGAAGTATGGAGTCCCCAATATATTGACACCAATAAGGAAATAAATGAGGATAGTCGTCCAGAGTATGATACTATCGCTGATCAGAATCTTGAGAGATGGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAAGCCAACCATGATAACAAGGCATCAGCTATTGTCAGTGGTAGTGAAGTATGGAGTCCAAAGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAAAAACATGAAGCCAACCATGATAGCAAGGCTGAGGCATCAGCTATTGTCAGTGGTAGTGAAGTACGGAGTCCAAAGTCTGAAGAAGAAATTGACAAGGTGGTTTTAAAAACCACACAAGAGATAAAACCGGACCAACCTAAGAACCAACTTTTGATAGGATCTATATCTGTTAATATTGACAATTTCAAACAATCAGAGGGTAATATGGTGGCTTCTCAAAAGGATTCTATTGTTGAGAATGTGGGTAAGGAGAATAGTTCTTGGGATAAGCCAGTGAATACTGATCCTGTCAGCCAGCATGAAACTGAAGATCAAGTTCCAGTTCAAAGTGACGAGACAGAAGTAAGCATGGGTAGTACAGATGGCAGAGCGGATATTAGACGCTTCCAGGCCTTCATTCAGGAAGCAAAAGCTTTCCTTGCAAGAAGATGGGAAGAAGCTTTGGCATCAGATCATGTGGTATTGCATATTAGCTCTGACTCGGATTCTTCATCGTCCCAAGAAACGGAGGATTCTATAGCAGATACCAAATTGCCTGCAACCTCCGGAGCAAACCCGGATTGA 1902 0.4111 MNTEEKDTTGGESSLHFPTPDGNSDHLLHLLYALDSQGWPLLSPMDIQLQKCDKCSREFCSPINYRRHIRVDHRKKSPDKDFTKNRDLLEAYWDKLSAEEANEVVSLENVVLEDILQSKPSNFPISSQVLFNVLDEASEKTCLCGTVESVHKYVFVGDAGKNGLELKNIIAFTSFLLEQKLVKAWLTDKEAEALRCQKQLVEEEEAAQKRQAEISERKRQKKLRQKQQKAREQRQKAEAEINGYIESAVKALSLTEASLDTQNVEAHNPNAFSDNVASPVPPQYVDTNKEINEDTRSEYDTIVDQHLERLSEADDLHTDQISPLPNLEVNQKHESNHDNKASAIVSGSEVWSPQYIDTNKEINEDSRPEYDTIADQNLERWSEADDLHTDQISPLPNLEVNQKHEANHDNKASAIVSGSEVWSPKSEADDLHTDQISPLPNLEVNQKHEANHDSKAEASAIVSGSEVRSPKSEEEIDKVVLKTTQEIKPDQPKNQLLIGSISVNIDNFKQSEGNMVASQKDSIVENVGKENSSWDKPVNTDPVSQHETEDQVPVQSDETEVSMGSTDGRADIRRFQAFIQEAKAFLARRWEEALASDHVVLHISSDSDSSSSQETEDSIADTKLPATSGANPD* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1826 633 MobiDBLite consensus disorder prediction 527 563 - -
Vra1g1826 633 MobiDBLite consensus disorder prediction 604 633 - -
Vra1g1826 633 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 78 IPR013087 -
Vra1g1826 633 ProSitePatterns Zinc finger C2H2 type domain signature. 52 73 IPR013087 -
Vra1g1826 633 MobiDBLite consensus disorder prediction 1 20 - -
Vra1g1826 633 MobiDBLite consensus disorder prediction 527 567 - -
Vra1g1826 633 Coils Coil 186 211 - -
Vra1g1826 633 MobiDBLite consensus disorder prediction 211 235 - -
Vra1g1826 633 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 566 621 - -
Vra1g1826 633 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 112 568 - -
Vra1g1826 633 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 115 - -
Vra1g1826 633 MobiDBLite consensus disorder prediction 405 474 - -
Vra1g1826 633 Coils Coil 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1826 Vra-Chr1 34830605 34837384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1826 6 352 C2H2 Transcription Factor Family AT4G25610 40.050 2.52e-77 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra1g1826 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1826 - - vra:106765971 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1826 1 34830605 34837384 Vra1g1826 1 34830605 34837384 ECH
Vra1g1826 1 34830605 34837384 Vra8g2220 8 40488407 40494704 PCT