LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra1g1812	ATGACTCAGGACGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAACCACACCAAACCCACCCACCGTGACTTCCACCACCACTCCCAGATCTCCAAACACCACCTCTTGCTTCGGTTCCAGCCACGAGAATGCATCATTCTCTTTTCCCAATCTTCTGCAACCACCAACCAATGAGTCTCAAGAGCTTCACCAGTTGCTAATAGACTTCAACCCCACCACCACCACCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTTGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGGTTTTGACAGATTCCAAGAACAGCACCACCACCAACAACATCAATCCCAAACTCCAGAACAACAGCAACGAAAGCAAAACCTGCCTCAACTTCAAGCACCCCAAACAAGTCCTATCCTTTCACCAACTACACAACCGCAAACACCCAGATCAAGAAAGAGAAAAAACCACCAGAAGAAAATTGTGCGTCATGTAACCGCAGACAACCTCTCGGCAGACTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCGTATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCAACACCGAACCCAACATGTTCATCGTCACCTACACCGGCGAACACAAGCACGCCAAACCCGTTCACCGGAACTCCCTCGCTGGCAGCACCCGAACCAAGCCGTCTCCAACCGGTTTACCCGAAGCCAACGAAGCTATTTCTGGTATCAAAATAGAGAACGCGTGTTCATCGACTTCTGAGCTTTCTACGACGTCGTTGAAGTCTGGCACGCCGGAAAATGAGGAAACGGTCGCCGACGGCGAACCTGATTTCCCTGAGATGGAAGTTGATCCTGACGCGCTGTCTGACAACGACTACGACCTTTTGATACCCAACACTGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTCAAACAAAGGGATCGGATCCGAATAGCGAATCCGGGTTGACCCAGTCCAAATCAGACCCATTTTCCAACACGGTGTAG	1194	0.4966	MTQDDWDLFAIVRSCKAATFTATTTTPNPPTVTSTTTPRSPNTTSCFGSSHENASFSFPNLLQPPTNESQELHQLLIDFNPTTTTTISSTITSAIGINPNSTFSDVAGFIGQQHIQQGHHHHLVPAPTNHTSIGAPSTTGFDRFQEQHHHQQHQSQTPEQQQRKQNLPQLQAPQTSPILSPTTQPQTPRSRKRKNHQKKIVRHVTADNLSADSWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSNTEPNMFIVTYTGEHKHAKPVHRNSLAGSTRTKPSPTGLPEANEAISGIKIENACSSTSELSTTSLKSGTPENEETVADGEPDFPEMEVDPDALSDNDYDLLIPNTGAMSDAVLLGLTNGAQTKGSDPNSESGLTQSKSDPFSNTV*	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	327	346	-	-
	Vra1g1812	397	ProSiteProfiles	WRKY domain profile.	205	271	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra1g1812	397	Gene3D	WRKY domain	193	264	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	305	323	-	-
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	114	201	-	-
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	305	350	-	-
	Vra1g1812	397	PANTHER	WRKY TRANSCRIPTION FACTOR 27-RELATED	4	380	-	-
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	267	293	-	-
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	370	397	-	-
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	22	50	-	-
	Vra1g1812	397	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	4	380	IPR044810	GO:0003700
	Vra1g1812	397	SMART	WRKY_cls	210	270	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra1g1812	397	MobiDBLite	consensus disorder prediction	154	188	-	-
	Vra1g1812	397	Pfam	WRKY DNA -binding domain	212	268	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vra1g1812	397	SUPERFAMILY	WRKY DNA-binding domain	205	271	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra1g1812	Vra-Chr1	34519357	34521365	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra1g1812	189	288	WRKY Transcription Factor Family	AT5G52830	78.000	7.88e-52	175

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vra1g1812		WRKY	6.6e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra1g1812	K13425		-	gmx:100788213	495.738