Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1780 ATGGTATCCAAAAACCCGAACCCGCCGGAGGGATTCTACTTGGATCCGACTGTCATGGCTCTCCCAGGGATGCCTCCCTTCGCCTCCGTCTCTGCTGCTGCTGCCGCCGCCGTCTCCGCCTCCAACTCCTCGGATGATGCAGCCAAGAAGATCCGCAAGCCCTACACTATCACCAAGTCGCGGGAGAACTGGACCGAACCAGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGTAGTCATGCACAGAAATACTTTCTCAAAGTTCAGAAGAGTGGAGCAAGTGAACATCTTCCGCCACCCAGACCTAAAAGAAAAGCAGCACATCCATATCCCCAAAAAGCTTCCAGAAATGCTCCTGTACTCCCACAAGTATCAGGATCTTTTCAATCCTCATCTTCTTTGCTTGAACCTGGATATATCCTGAAAAATGATTCCCCAGCAATGCTTAAAATTCCTATGAACACTGTGGTGTCATCCTGGTCAAACAACACCTTGCAAACTGTCAATTTATCCCCTGTGACAAAAGTTAATAATCCTTGCAGTAGTGGTGAAAGCACTCCTAAAGTGCGCCCAGCTGTTGAATCTCATGGTCAAGGACCTCATCAAGGGAATAAAATCCATCCATTGAGAGTTCTTCCAGATTTTACTCAGGTATATGGTTTCATAGGCAGTGTATTTGATCCAAATGCAACTGAACATCTGCAGAAGCTAAAAAAGATGGACCGTATAGACGTTGAGACAGTGCTACTGCTAATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTTGAGGATCATAGAAAGTTGCTTTCATCATACGAGGTTGAACCAGAGAGAAATAACTATCAATGTGGATAG 924 0.4502 MVSKNPNPPEGFYLDPTVMALPGMPPFASVSAAAAAAVSASNSSDDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPPRPKRKAAHPYPQKASRNAPVLPQVSGSFQSSSSLLEPGYILKNDSPAMLKIPMNTVVSSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPAVESHGQGPHQGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEVEPERNNYQCG* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1780 307 MobiDBLite consensus disorder prediction 197 228 - -
Vra1g1780 307 Gene3D - 63 111 - -
Vra1g1780 307 PANTHER PROTEIN REVEILLE 6 3 303 - -
Vra1g1780 307 MobiDBLite consensus disorder prediction 112 148 - -
Vra1g1780 307 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Vra1g1780 307 PANTHER SWI/SNF COMPLEX-RELATED 3 303 - -
Vra1g1780 307 CDD SANT 63 106 IPR001005 -
Vra1g1780 307 SMART sant 60 108 IPR001005 -
Vra1g1780 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vra1g1780 307 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vra1g1780 307 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vra1g1780 307 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vra1g1780 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1780 Vra-Chr1 33838135 33846109 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra1g1780 Myb_DNA-binding 4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1780 - - gmx:778054 503.827