Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1765 ATGGACCAGTCTCTGCTGAGAGGCGAAAGCAGTGGCTTCGGCTCCCGCCGGCGAGGACTGTTCCGGCGTTCCGACGCTATAACCTACGGTTCCAACTACGAGAAAGCCGCTGCGCTCATCGATCTGGCTGAAGATGGTGTCGGTCTCCCTGAACAAATTCTTGATTCATCAAACTTCCAAAATTATGCAAGATTTTATTTTATATTTATTAAATTCAATCTCATATGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTGTGGTGTAAAAAACTCGCCACACATTCCTGCAACGATAGAGAGTATTTCTATTTGGGTCAGTTGCCGTATCTTACTGATGCAGAATGTCTTATTTATGAGGCAATAGCTCTTCTTGTGCTAATCATACATACTTTCTTCCCATTGTGGTACGAAGGATCTCGTATATATTGGAAAAGTACTTTTAATCAATTGAAGGTTTTCTGTCTATTAGTTCTTGTTGTTGATACGCTGCTCTATGCCTTTTACTTGTCTCCACTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATATCAGAGTGGTTCTTTTTGTTCTGAACATTAGGGAGCTACGAGAAACCATCACTATCTTGTTTGGGATGCTTGACACATACTTAAATGTTTTGGCGCTGGGACTTCTGTTTCTTCTTTTTGCTAGTTGGGTGGCATATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTATTCACTTCATATGGTGCTACCTTGTATCAAATGTTTCTTTTATTTACCACATCCAATAACCCAGATGTTTGGGTTCCTGCATACAAGTCTTCTCGTTGGTACTGCCTCTTTTTTGTACTGTTTGTGCTGGTGGGGGTTTACTTTGTTACAAACCTTATCCTTGCCGTTGTCTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTTGAAAAGGATCTTCTGAGAAGAACTATGCTGGATAAAGCTTTTAATCTCTTAGATACACTTAATATTGGAGCTCTCAACAAAAATCAATGCATAAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGTGAAGAATTTGAGCTGATATTTGATGAGCTGGATGATAGTCATGATATAAAGATCAACAAGGATGAATTTGCTGATATTTGCAACGCAATTGCTTTAAAATTTCAGAAGGAAGATGTTATGTCTTACTTTGAGTATTTAGCATTCTACGATTGGCCCAGCTCAAAGACATTGAAAGAATTTGTAAAGAGTGCTATGTTTGGATACATAGTGTCCTTCATTCTCATAGTAAATCTGGTTGCAGTTATTATTGAGACAACGCTTGATATAGAAAACAATTCTGGTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTTGGGTGGATATATGTAGTAGAAATGCTTTTAAAGGTTTATGCATATGGATTTGAGAACTACTGGCGAGATGGTCAAAATCGCTTTGATTTTGTTATCACGGTGATAATTGTCATTGGAGAAACTGTAACTTTTGCTGTACCTGATGATGCTCTTCCTTTTATCGCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGACTCCTAATGCATGTCAAGAGATACCGAGCCTTTGTAGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGCATTTATTGTTCGCTTGGTGTACAGATTTTTGGTGGAATTGTTAACGCTGGAAACCCAGAATTGGAATCAACAGCTCTTGCCGAAAATGACTATTTGGTTTTCAATTTCAATGATTACCCTAATGGAATAGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGTTACACGGAACTAACTGGGACTTCGTGGACTTATTTGTACTTCATTAGCTTCTACTTAGTTACTGTTTTGCTGCTTTTGAACTTGGTTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCTTCGGAAAGTTCTGAAGGAACGGACAAGGATGTTGAAGGAGATAAATATCGAAAACGGTCTATTGGCACTAAAACACGAAGCCAGAGGGTTGATACTCTTCTTCATCATATGTTGAGTGCCGAGTTGTGCCAAAATCAGCCTTCCAATACAGCAACTTCATAA 2217 0.3866 MDQSLLRGESSGFGSRRRGLFRRSDAITYGSNYEKAAALIDLAEDGVGLPEQILDSSNFQNYARFYFIFIKFNLIWSLSYFALIVLNFLEKPLWCKKLATHSCNDREYFYLGQLPYLTDAECLIYEAIALLVLIIHTFFPLWYEGSRIYWKSTFNQLKVFCLLVLVVDTLLYAFYLSPLAFDFLPFRIAPYIRVVLFVLNIRELRETITILFGMLDTYLNVLALGLLFLLFASWVAYVFFEDTIQGKTVFTSYGATLYQMFLLFTTSNNPDVWVPAYKSSRWYCLFFVLFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDLLRRTMLDKAFNLLDTLNIGALNKNQCIRLFEELNKYRTLPKISSEEFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVMSYFEYLAFYDWPSSKTLKEFVKSAMFGYIVSFILIVNLVAVIIETTLDIENNSGQKVWQVVEFIFGWIYVVEMLLKVYAYGFENYWRDGQNRFDFVITVIIVIGETVTFAVPDDALPFIANGEWIRYLLLARMLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELESTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYTELTGTSWTYLYFISFYLVTVLLLLNLVIAFVLEAFFAEMDLESSESSEGTDKDVEGDKYRKRSIGTKTRSQRVDTLLHHMLSAELCQNQPSNTATS* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1765 738 MobiDBLite consensus disorder prediction 688 708 - -
Vra1g1765 738 Gene3D - 423 556 IPR027359 -
Vra1g1765 738 Gene3D - 557 716 - -
Vra1g1765 738 Gene3D - 203 315 - -
Vra1g1765 738 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Vra1g1765 738 SUPERFAMILY Voltage-gated potassium channels 432 677 - -
Vra1g1765 738 Pfam Ion transport protein 432 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra1g1765 738 Pfam Ion transport protein 126 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra1g1765 738 Gene3D - 320 397 - -
Vra1g1765 738 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 732 IPR044581 GO:0005245
Vra1g1765 738 SUPERFAMILY EF-hand 328 395 IPR011992 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1765 1 737 Ion Channels AT4G03560 66.125 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1765 K16900 - gmx:100806160 1281.16