Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1762 ATGAATGACCTGCCTCAGTGCACAGGAAATAGTCCTGAGCCTAATGAAAGTTGTTTGGACAACGAGCCTAAGATTCATATGTGTTTTGATTCAATGGAAGAGGCAAAGAAATTCTACACAAATTACGCCATCACATGTGGATTTGCTGTGAGGACAAGATCTTCGAAAAAGAATAAGGAAAACAATGTGTACTACTTGCGATTAGTTTGTTCAAGAGAAGGGAAATATGTATCTTCCATCAAGCCTGAAGTGAAAACACTTGCAAGCCAAACAAATAAATGTCCAGCAAGCATTACCATTGGAAAGAAGGACAATAAATGGTTTATAAAATCCGTTGAACTACATCATAGTCATGACCTATGCCCTAATACATCTAAGCTAATTGCAGGGAATAGAAAATTGAGCATGCAAGCGAAACACACGTTGCAAGTCAATGACGATGCCGGAGTTAGGATAAATAAGAGTTTCCTTAGCATCGTTAGCGATGTAGGTGGATTTGAGAATATGGAATTCGTTGAACGAGACGCAAAAAACTACGTTGTGCAACACAGGAAGTCTTTATGTAAGGACAACGATGGTCAAGCCCTCTTAAAACACTTTTCATCAATGAAAGCTTTAAACAATGACTTCTTCTACGACATTGCATTGGACGAAGGGAATAGAATATGTAGTGTTCTTTGGGCAGATGCAAGAAGTAGAGCGGCGTTTGAGGAATTTGGTGATGTTGTTTCTTTTGACACGACTTACTTGACAAATAAGTATGACATGCCGTTTGCGCCGTTTGTCGGCGTAAATCACCATGGTCACTCAATCTTACTTGGATGTGGATTTCTTTCTTCCGAAGACACTGCATCATTCGTGTGGTTGTTTGAATCTTGGTTGAGATGCATGGGAAATAAGGCCCAAGATGGTATTATAACGGATCAGTGCAAGGCAATGGCAAATGCAATTGAAGAGGTTTTTCCAAACACAAGACACAGGTGGTGTTTGTGGCACATAATGAAGAAGTTGCCTGAAAAATTTCAAGGCTACAAAAATTATGTTGCCATTAAAACCGATATACACGCCATTGTATATGACTGTGGTTCGCCAAGCGAGTTCGAGAATGGATGGGAAGATCTACTTACAAAGCATGGATTGGAGGCAAATGATTGGTTATGTGATCTTTATGATGCAAGAAGAAAACGGGTTCCATGTTACTTAAGGAGTTATTTTTGGGCGGGTGCGTTGGTAGGTAATCAGGTGAGTTTGCACTGGTCAATGTCGATGATTGGTTATGTGATCTTTATGATGCAAGAAGAAAACGGGTTCCATGTTACTTAA 1323 0.3983 MNDLPQCTGNSPEPNESCLDNEPKIHMCFDSMEEAKKFYTNYAITCGFAVRTRSSKKNKENNVYYLRLVCSREGKYVSSIKPEVKTLASQTNKCPASITIGKKDNKWFIKSVELHHSHDLCPNTSKLIAGNRKLSMQAKHTLQVNDDAGVRINKSFLSIVSDVGGFENMEFVERDAKNYVVQHRKSLCKDNDGQALLKHFSSMKALNNDFFYDIALDEGNRICSVLWADARSRAAFEEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCGFLSSEDTASFVWLFESWLRCMGNKAQDGIITDQCKAMANAIEEVFPNTRHRWCLWHIMKKLPEKFQGYKNYVAIKTDIHAIVYDCGSPSEFENGWEDLLTKHGLEANDWLCDLYDARRKRVPCYLRSYFWAGALVGNQVSLHWSMSMIGYVIFMMQEENGFHVT* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1762 440 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 414 IPR031052 GO:0006355
Vra1g1762 440 PANTHER OS03G0843700 PROTEIN 19 414 - -
Vra1g1762 440 Pfam FAR1 DNA-binding domain 37 121 IPR004330 -
Vra1g1762 440 Pfam MULE transposase domain 242 336 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1762 Vra-Chr1 33491573 33492895 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra1g1762 MULE 7.4e-35 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1762 - - vra:106753602 740.725