Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1758 ATGAAGGTTTCATTATCAACACCATTTTCTGGGATACCATTATGGGCTTTGCTTGTGGTAGTTTCAATATCATCATTCATTGTTGTGACCTGCATCATTTTGTGCTTTTGCTTCGTATATTATCCTCGTAAAAAACCATACAAACCTCGTTTTTCTTTACCTAAATCAATAGCATGCAAGCACCACAATGGTGATTTTAGCTCTTCCTCTCTTGACAAGAGGTTACTATCAGCATCAGGGAATGTTTCAGAACACAGTATGAACTTTGAGAAGTTGTCATCAGGTTATTACAATCATGAGTTGTTCATACCTGGTCAGTTTTATCCAATGGGATATGACACTTCAAATGATAGGTATTTGGAAGGTTTGAGATCAAAAGGTAAGTTATGTTGCACAGTCAATGATAAGAGTAAGGGGTGGAACTTTAGCCTTAAGGAGATAGAGGATGCTACTAATGGATTTGCTAAAGAAAATGAGCTTGGAAGTGGAGATAATGGGATTGTTTATCTTGGTTTGTTACCAAGTAATAGACAAGTGGTAGTGAAGAGGCTAGTATGTAACAGTCACCAACCTGAGGAACTTTTTGCATCCCAAATGGAAGCAATTGGACTTGCAAAGCACAATAACCTGGTCAAATTACTTGGATACTGTGCAGAGGGTGCTTACAGGATGTCAGTTTCTGAATATGTAGAACATGAAAGTCTGCACCACTGGCTTCATGAATTTCCTGCACAAATCAGCCCTCTAACATGGGATATAAGAAAGAACATAATCCATTGTGTGGCAAAAGGACTGGCATACCTTCATGATGAAGTTAAACCAAAGATTCTCCATGGCAGCCTAAAAGCTACTAATATTTTGCTGGACCACAAATGGAATCCAAAAATATCTGATTTTGGCCTTGTTGAGGTTCTCAGTTCCAAAAGGAGTCACATTATACTAGAAGTGAAAGAATTGAGTAAACTGACTTTATCACTAGTTAACGTGAGACTTCAAACAAACTTATTATATAATTTCATACAATACACATGCTCCAGTTATGAAGCTCCAGATTGTCATGCAAGTAGTAACTTAACTGAGGGTAATGATATTTATGATTTTGGATTACTTATTATGGAGATTGTATCAGGAAAAATCCCTTCATATCACGGCCAGACACAGACTAATATAGTGGACTGGTTCAAATCAATGATTTCCAATGGGAAGATGGAGAATGCAATAGATTCAAAATTGCTTAAAATGCCTTCTTCCAAGGCACTTAAACAGGTTGCTTTGGTTGCTCTAAGATGTGTAGATCCTGATGTGAATCCTAGACTCAAGATGAGAGATGTAGTTTGCATGCTTGAAACCAACATTCTTCTTTTTGAGGAACGTCAAATTGCCATGAAGACTTTAGAAGCCAATCACTCTCCACAAAATCAGAAAAAATAG 1431 0.3725 MKVSLSTPFSGIPLWALLVVVSISSFIVVTCIILCFCFVYYPRKKPYKPRFSLPKSIACKHHNGDFSSSSLDKRLLSASGNVSEHSMNFEKLSSGYYNHELFIPGQFYPMGYDTSNDRYLEGLRSKGKLCCTVNDKSKGWNFSLKEIEDATNGFAKENELGSGDNGIVYLGLLPSNRQVVVKRLVCNSHQPEELFASQMEAIGLAKHNNLVKLLGYCAEGAYRMSVSEYVEHESLHHWLHEFPAQISPLTWDIRKNIIHCVAKGLAYLHDEVKPKILHGSLKATNILLDHKWNPKISDFGLVEVLSSKRSHIILEVKELSKLTLSLVNVRLQTNLLYNFIQYTCSSYEAPDCHASSNLTEGNDIYDFGLLIMEIVSGKIPSYHGQTQTNIVDWFKSMISNGKMENAIDSKLLKMPSSKALKQVALVALRCVDPDVNPRLKMRDVVCMLETNILLFEERQIAMKTLEANHSPQNQKK* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1758 476 ProSiteProfiles Protein kinase domain profile. 154 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1758 476 PANTHER BNAC04G54280D PROTEIN 2 474 - -
Vra1g1758 476 Gene3D Phosphorylase Kinase; domain 1 120 229 - -
Vra1g1758 476 PANTHER OS01G0323000 PROTEIN 2 474 - -
Vra1g1758 476 Gene3D Transferase(Phosphotransferase) domain 1 230 463 - -
Vra1g1758 476 SUPERFAMILY Protein kinase-like (PK-like) 138 449 IPR011009 -
Vra1g1758 476 Pfam Protein kinase domain 155 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1758 476 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1758 Vra-Chr1 33449512 33453026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1758 142 452 Receptor kinase-like Gene Family AT1G53430 35.144 1.51e-45 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra1g1758 Pkinase 8.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1758 - - vra:106762086 957.977