Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1749 ATGGAGACTCAAAAGCTAATTATACATGTCATTCTTCTCCTATGCATTCCTTGTTCATCCTCTTTCACTCCCATAGATAACTACCTTCTTAGCTGTGGATCACAGAACAATGCTTCTCTCTTCAATCGCATCTTCACTGGTGATTCCACCAACCAAGTCTCAAGTTTTCTCTCTGCTGACAAATCCATTTCCCTCACCAACCAAAACCCTCCTCCGGATTTGCCCATTTTGTATCACACTGCAAGAGTTTTCCCCAGCACAGGAAGCTTCAGGTTCAACGTGAGAAAGCATGGCACCCACTTGGTTCGTTTTCATTTCTCTCCTTTTAAGGCTCAAGGGTTTGATCTAAAAGCTGCTAACTTCAGTGTCTTGGTTGATGGTAATTTGGTGCTTAGAAATTTCAAGCCAAGTAATGGTGTGTTGCTTAAGGAGTTTATTCTGAAGATAGAGTCAAATTTACTTGAAATTGTGTTTAGACCTGAAGGTAATTCAGGTTTTGGCTTTGTAAATGCTATGGAGGTGTTCACTGCTCCTGTTGATTTTGTTATAGATTATGGAGCAAGGTTAGTGGGTCCTTTTGGTGTGGTAGAGTACAAGAACCTTTCATCTCAGGTATTGGAAACTGTCCATAGGATTAATGTTGGGGGTGTGAAAGTAACTCCCTTTAATGACACCCTTTGGAGGACATGGATTCCTGACGAGGAATTTCTGGTTTTTAAGGATGCTGCTAAGCCTGCGAGGAGTAATCAAACACCAAATTTCCAGAAAGGAGGCGCCACTCGGGAGATCGCGCCAGATAGTGTTTACATGACTGCACAGGAAATGGATAAGGATCACGCCGTTATAGGTTCAAAGTTCAACATAACCTGGGATTTTCCAGTGGCTCCAGGTGGTGTTCGGCACTTGGTTCGGTTGCATTTCTGTGATATTGTTAGTCCTGTTCTTAATTTGCTCTATTTTGACGTGTATATCAACGGGTATTCTGCATACAAAGATTTGGATTTGTCATCCCTTACAGTCCATGTGCTTGCATCTCCGGTCTATGTGGATTTTGTTGCAGATTCTAATGATTCAGGTGTTATTCGAATAAGTGTTGGCCCTTCTGAACTGAGCGGTTCTAGGGGTATGAATGCCATTCTGAATGGGGCAGAGATAATGCAGCTGGTGAATGTTGTGGACTCACGTGTTGTTCCTGGGAAGAAGAGGTTGTGGATATTGGTGGGTTCAATTACAGGTGGTGTTGTTGTTTTGCTTTTAGTTATGTCTGCTTTTGTGCTTGCTCTCAAATGCAGGAAGAAGAAGAAGAAGAAAAAACCAAAACAAAGAACACTGGAAAGTGTAGGATGGACTCCTCTACGTGTGTTTGGGGGGAGTTCACTTAGTAGAATGTCTGAAGGAACAGCCTTTCCATCTCCTGGTTCTTATGGTTATTTCGGATTGAGAATCCCTTTTGCTGATATACAATCAGCCACAAATAACTTCGATAGGAGTCTAATTATAGGATCTGGTGGGTTTGGTATGGTTTACAAAGGAGTGCTCAAAGACAATGTGAAGGCTGCTGTCAAAAGAGGCATGCCTGGGTCAAGACAAGGACTTCCTGAATTCCAGACTGAAATAACAATCTTATCCAAAATTCGCCATCGCCATCTTGTTTCACTGGTTGGATACTGTGAAGAAAATTCAGAGATGATACTAGTCTATGAGTATGTTGAAAAGGGTCCACTCAAAAAGCATCTATATGGTTCAGCAGTACATGCACCTTTGTCTTGGAAGCAGCGGCTTGAGATATGCATTGGTGCAGCTAGAGGTCTCCACTATCTACACACAGGTTTCGCGCAAGGAATCATACACCGTGACATCAAGTCAACCAATATTTTGCTGGATGAGAACTATGTTGCCAAGGTTGCTGATTTTGGTCTTTCAAGATCAGGACCTTGTCTCAACGAAACCCATGTTAGTACTGGTGTGAAAGGAAGTTTTGGTTATCTTGATCCAGAGTATTTCCGAAGGCAGCAGCTTACGGATAAGTCAGATGTTTACTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCCAGACCTGCTGTTGATCCACAACTTGATAGGGAACAAGTGAACTTAGCCGAATGGGCACTTGAATGGCAGAAAAAAGGCATGCTGGAAGATATTATTGATCCTCATCTTGTTGGGAAGATAAAGCAAAGCTCGTTGAAGAAATTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGATAGGCCAACCATGGGTACTGTATTGTGGAATTTGGAATATGCACTTCAGCTCCATGAAAGTGACCAAGAAGATGAAGAGCCATACGATGATAGCAGTGCTCAGGAAACAGTGAATGTGACTACTACGATAACTCCCGGGAGTCCTTCTAGCAACATGAGAAGAGAGGAAAATAATGATAATGGTTATTCAGACATAAGTGCTAGTGAAGTTTTTTCTCAACTAATGAAGAGTGAAGGTAGATAG 2505 0.4216 METQKLIIHVILLLCIPCSSSFTPIDNYLLSCGSQNNASLFNRIFTGDSTNQVSSFLSADKSISLTNQNPPPDLPILYHTARVFPSTGSFRFNVRKHGTHLVRFHFSPFKAQGFDLKAANFSVLVDGNLVLRNFKPSNGVLLKEFILKIESNLLEIVFRPEGNSGFGFVNAMEVFTAPVDFVIDYGARLVGPFGVVEYKNLSSQVLETVHRINVGGVKVTPFNDTLWRTWIPDEEFLVFKDAAKPARSNQTPNFQKGGATREIAPDSVYMTAQEMDKDHAVIGSKFNITWDFPVAPGGVRHLVRLHFCDIVSPVLNLLYFDVYINGYSAYKDLDLSSLTVHVLASPVYVDFVADSNDSGVIRISVGPSELSGSRGMNAILNGAEIMQLVNVVDSRVVPGKKRLWILVGSITGGVVVLLLVMSAFVLALKCRKKKKKKKPKQRTLESVGWTPLRVFGGSSLSRMSEGTAFPSPGSYGYFGLRIPFADIQSATNNFDRSLIIGSGGFGMVYKGVLKDNVKAAVKRGMPGSRQGLPEFQTEITILSKIRHRHLVSLVGYCEENSEMILVYEYVEKGPLKKHLYGSAVHAPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCLNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPQLDREQVNLAEWALEWQKKGMLEDIIDPHLVGKIKQSSLKKFGETAEKCLAEYGVDRPTMGTVLWNLEYALQLHESDQEDEEPYDDSSAQETVNVTTTITPGSPSSNMRREENNDNGYSDISASEVFSQLMKSEGR* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1749 834 CDD STKc_IRAK 500 766 - -
Vra1g1749 834 ProSiteProfiles Protein kinase domain profile. 494 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1749 834 MobiDBLite consensus disorder prediction 786 827 - -
Vra1g1749 834 Pfam Malectin-like domain 30 387 IPR024788 -
Vra1g1749 834 SUPERFAMILY Protein kinase-like (PK-like) 477 763 IPR011009 -
Vra1g1749 834 MobiDBLite consensus disorder prediction 774 834 - -
Vra1g1749 834 Gene3D Phosphorylase Kinase; domain 1 474 569 - -
Vra1g1749 834 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Vra1g1749 834 Pfam Protein tyrosine and serine/threonine kinase 499 705 IPR001245 GO:0004672|GO:0006468
Vra1g1749 834 SMART serkin_6 494 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1749 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Vra1g1749 834 PANTHER OS07G0166700 PROTEIN 15 795 IPR045272 GO:0004714|GO:0006468
Vra1g1749 834 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 795 - -
Vra1g1749 834 Gene3D - 205 389 - -
Vra1g1749 834 Gene3D - 27 180 - -
Vra1g1749 834 Gene3D Transferase(Phosphotransferase) domain 1 570 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1749 Vra-Chr1 33331380 33334437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1749 2 834 Receptor kinase-like Gene Family AT3G46290 50.294 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra1g1749 Malectin_like 6.1e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1749 - - gmx:100787484 1466.44