Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1748 ATGGATGCGAATATTGATGATAAGAGTGAAAGTAGACTATATATTGGTAACCTTGATCTTAGAATTACAGAAGCTTCTTTGCTCAAAATGTTTTCGCCTTATGGAAAGATAATTTCTGAGGATTTCTTATGGCACACACGTGGCCCAAAACGCGGGGAGCCACGAGGCTTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTCGCCTGCGGCCGGCCGCTGGTTGTTCGTCTTGCCGGTGAGAAGTGCTTGCTGGAAACAGCTGATAAGTCTACAAAAGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGGAGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAGTTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGACAAAGTGAGTATATAA 477 0.4403 MDANIDDKSESRLYIGNLDLRITEASLLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGHKMLLIGGGSAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQSDKVSI* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1748 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 85 IPR000504 GO:0003723
Vra1g1748 158 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 154 - -
Vra1g1748 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 92 IPR000504 GO:0003723
Vra1g1748 158 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 154 - -
Vra1g1748 158 MobiDBLite consensus disorder prediction 139 158 - -
Vra1g1748 158 CDD RRM_RBM18 12 90 IPR039157 -
Vra1g1748 158 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
Vra1g1748 158 Coils Coil 130 150 - -
Vra1g1748 158 Gene3D - 8 102 IPR012677 -
Vra1g1748 158 SMART rrm1_1 12 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1748 Vra-Chr1 33322164 33324541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1748 11 93 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 3.54e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1748 K24527 - gmx:100806572 276.944