Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1746 ATGTCATCGCCGGGGTTCACTGGGGGAGGTGGAGCGTCCGAGTATTTCGCTGGAGCGGGTGGATTCACCGGCAGATCCATTCCGGCGGCCACCATGAACAACCCGAACGGCGTCGCGACTGCCACCGCAAACCTCCACCCTCTCTACCGTACCCAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTGCCTCGCAGATCGCTCAACGCCAGACACCAACCCTTATCGGTAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTATAACCAAGCCTATAACCAACCCAACAACAACCCCAACCACGTCCTCTCTAACCTCTTGCTTCGTTCCGTTAAGCCTCGAACCAGTTTCTCTCAGGGTTCCATGGATAACTTTCCCGAATTGCATAACCAAAACCCTTCTCTTTACCAACAGCAGCGTTTTGGTGTTCCTTTACTCCATCAGCTCCGTCCCCAGCCCATTAACCTTCCCAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTATCGGAACTCCGATTTGGGCATGCCACAAAACCGGGTTCGTCTTTCTGGTTCTCTTCCGGTTCCAGTTCAGGTGGCTGAGCCGGAGAAGAAGATCATGGATCACCGGCTTCTGGAATTGGAGAAACAACTTCTGGAGGATAACGATGAAGGAGAAGCCGATGCTGCGTCCGTGATAACCACCAGCGAGTGGTCTGAAACGTATCAGAATTTAATCAGCCCCGGTCCGGTTCAGAAACTGGCTTCGACATCACCGACTTCATCAACCACTTCGTCTACTTCATCATCTTCCTCCATCGCTTCACCTGCTTCCGGATGCTCAAAGCAGACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAATATGACATGGCTACTGAGATCCTGAACCGGTTGAACGGTCCGAACCGGACTGACAAATTAACCGATTGCATGGTGTTGGCGTTGAAGTCCAGGATGAATCCGGTTGAATATCCGCCTCCAGTGAAGGAGCTCTTCGGCTATGAACACGCTGAGTCCACTCAGTTGATTTTGGAAAACTTCATGTGCTTTAAGGTAGGGTTAATGGCTGCGAATCTGGCGATTTTGGAAGCTGCATTTGAGGAGAAAACGGAAAACAAGTTCTGCGTGGTGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTGCTCAACGCGCTCTCAGCACGTGGACAAAACGTCACGCTCAAAATAGTGGCTGTGGCCGAGAGCGGCAGCGAAGACAGAGTGCATGCCGTCGGAGACATGCTGAGTCGTTTAGCAGAAAGGAAGAGGATCGGGTTCGAGTTCAGACTTGTACCAACTCAGAAACTCACCGAGTTGACTCGCGTGTCGCTGGGATGCAATGAGGACGAAGTTCTCATGGTGAACTTTGCTTTCAAGCTTAACAAAATTCCTGATGAGAGCGTCTCCACAGAAAACCCTCGTGACGAGCTTCTCCGGCGCGTGAAGGGACTTACGCCGCGCGTGGTGACAATAGTGGAGCAGGAAATGAACGCAAACACAGCACCTTTTTTGGCTCGCGTGGCAGAAACGCTGTCGTTTTATGGGGCCTTATTGGAGTCCATGACATCTAGGGATAACAATAACAGCATCAACAGTTCTGACCGAGTCAGACTCGAAGAAGGACTGACCCGCAAGCTACACAACTCAGTAGCATGCGAAGGCAGAGATCGCATAGAGCGTTCTGAAGTGTTTGGAAAATGGCGAGCGCGTATGAGCATGGCAGGGTTCGAGTTAAAGCCACTGAGTCAAAACATGGCCGAGTCAATAAAATCACGACTCACTGGCACCACCAACAACAACCGAGTCAACTCGGGACTGACAGTGAAAGAAGAGAACGGTGGTATTTTCTCTGGCTGGATGGGAAGAACACTGACGGTAGCATCTGCTTGGCGTTAA 1947 0.5126 MSSPGFTGGGGASEYFAGAGGFTGRSIPAATMNNPNGVATATANLHPLYRTQQQNLPAMFLDPASQIAQRQTPTLIGKRTLTEFQTYNQTYNQAYNQPNNNPNHVLSNLLLRSVKPRTSFSQGSMDNFPELHNQNPSLYQQQRFGVPLLHQLRPQPINLPSNGSGPMPSPNFGYRNSDLGMPQNRVRLSGSLPVPVQVAEPEKKIMDHRLLELEKQLLEDNDEGEADAASVITTSEWSETYQNLISPGPVQKLASTSPTSSTTSSTSSSSSIASPASGCSKQTLMEAASAIVEGKYDMATEILNRLNGPNRTDKLTDCMVLALKSRMNPVEYPPPVKELFGYEHAESTQLILENFMCFKVGLMAANLAILEAAFEEKTENKFCVVDFEIGQGKQYPHLLNALSARGQNVTLKIVAVAESGSEDRVHAVGDMLSRLAERKRIGFEFRLVPTQKLTELTRVSLGCNEDEVLMVNFAFKLNKIPDESVSTENPRDELLRRVKGLTPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMTSRDNNNSINSSDRVRLEEGLTRKLHNSVACEGRDRIERSEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTGTTNNNRVNSGLTVKEENGGIFSGWMGRTLTVASAWR* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1746 648 MobiDBLite consensus disorder prediction 248 277 - -
Vra1g1746 648 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 647 IPR005202 -
Vra1g1746 648 Pfam GRAS domain family 281 648 IPR005202 -
Vra1g1746 648 ProSiteProfiles GRAS family profile. 271 648 IPR005202 -
Vra1g1746 648 PANTHER SCARECROW-LIKE PROTEIN 8 70 647 IPR030013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1746 Vra-Chr1 33255475 33257847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1746 49 648 GRAS Transcription Factor Family AT5G52510 46.910 1.57e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra1g1746 GRAS 5.5e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1746 - - gmx:100808172 933.324