Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1740 ATGGCAGGTGAGGTGGTGAAGAAGGAAGAATCTCTGAACCTGAAAATCACCAACAAGAGTTATGTGCAACCTGAGGAGAAGATTGGGAGAAAAGAGTACCAGTTGGTGACTTTTGATCTTCCATACTTGGCCTTCTACTACAACCAGAAGCTACTGTTCTACAAAGGGGAAGACTTTGATGGCATGGTTCAGAAGCTGAAGCTTGGGCTTGGTGTGGTTCTCAAGGAGTTCCACCAACTAGCTGGAAAGTTAGGGAAAGATGAAGAGGGTGTGTTCAGGGTTGAGTATGATGATGACATGCTTGGTGTGGAGGTTGTTGAAGCTGTTGCTGATGAGATTGCTGTGGATCAACTTACTGTTGCTGAAAGTTCCACCAATCTCAAGGACCTCATACCTTACACTGCTGTCTTGAACTTGGAAGGCATGCATAGACCCTTGCTCGCAGTTCAGTTAACGAAGCTGAAAGATGGGCTTGCGATGGGCCTGGCATTCAACCATGCTGTATTGGATGGGACTGCCACGTGGCAATTCATGACATCGTGGGCCGAGATTTGCAATGGGTCACCCTCCACGTCAGCACCACCGTTCCTGGACCGGACCAAGGCCCGGAACACGAGAGTGAAGCTGGACCTCTCCCTGCCGGAGCCCAACGGCCAACCAACTTCCAACGGTGATGCAAAGCCCACTCCAACTCTTAGGGAAAGGATATTCAAATTCTCGGAGTCAAAGATCGACAAGATCAAGTCAACGGTCAACGAGAACCCTCCATCGGACGGCTCAAAACCGTTCTCAACATTTCAAGCTCTTTCCTCCCATGTCTGGCGCCATGTAAGCCATGCACGTAACCTGAAGCCGGAGGACTACACTGTTTTCACCGTCTTCGCTGACTGCCGGAAGCGGGTCGACCCACCGATGCCGGAGAATTACTTCGGAAACCTAATTCAGGCTATATTCACCGTTACGGCGGCTGGGCTTTTAGCGGCTCATCCGCCGCAATTCGGTGCTTCATTGGTCCAGAAGGCCATTGAAGATCATAATGCGAAGGCTATCGATGCACGTAATAAGGAGTGGGAGAGTGCACCGAAGATTTTCCAATTCAAAGATGCTGGGGTGAATTGTGTGGCCGTTGGAAGCTCACCTAGGTTTAAGGTTTACGACATTGATTTTGGTTGGGGTAAGGCAGAGAATGTGAGAAGTGGAACTAATAACAAGTTTGATGGGATGATTTACTTGTATCCAGGGAAGAATGGAGGAAGGAGCATTGATGTGGAATTAACCTTGGAGCCTGAGGCTATGGCGAGGTTGGAGAAAGATAAGGATTTTCTTTTGGAAGCATGA 1338 0.4903 MAGEVVKKEESLNLKITNKSYVQPEEKIGRKEYQLVTFDLPYLAFYYNQKLLFYKGEDFDGMVQKLKLGLGVVLKEFHQLAGKLGKDEEGVFRVEYDDDMLGVEVVEAVADEIAVDQLTVAESSTNLKDLIPYTAVLNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTATWQFMTSWAEICNGSPSTSAPPFLDRTKARNTRVKLDLSLPEPNGQPTSNGDAKPTPTLRERIFKFSESKIDKIKSTVNENPPSDGSKPFSTFQALSSHVWRHVSHARNLKPEDYTVFTVFADCRKRVDPPMPENYFGNLIQAIFTVTAAGLLAAHPPQFGASLVQKAIEDHNAKAIDARNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGKAENVRSGTNNKFDGMIYLYPGKNGGRSIDVELTLEPEAMARLEKDKDFLLEA* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1740 445 Pfam Transferase family 14 441 - -
Vra1g1740 445 Gene3D - 214 438 IPR023213 -
Vra1g1740 445 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 19 441 - -
Vra1g1740 445 MobiDBLite consensus disorder prediction 211 230 - -
Vra1g1740 445 PANTHER BAHD ACYLTRANSFERASE DCR-RELATED 19 441 - -
Vra1g1740 445 Gene3D - 11 212 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1740 Vra-Chr1 33110336 33112717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1740 64 444 Monolignol Biosynthesis Gene Families AT5G48930 26.551 3.45e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1740 K19747 - gmx:100790669 817.764