Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1729 ATGTTAGTTCGTTGTACTGAAGCTTGGGATGTGTTGATGTATGCATGGGAAAATGTGATGGATTGTGTTGATGAGAGCTTGTTTGCTGAGTATGTGAATGGTCTTCAATATGCCAGCAGTTCATGGGCTTTGTTCTTTGAATATGTGAATCAAACTTGGATCATTCCGGTTGAGTCTACTCATGCGAGTCTAAAGTCAATTTTGAGCAATAATATGGGTGATTTGTCTTCTTGTTGGGATAGTATTCATAACTTCGTTATCCTACAACATAACAAGATTAAGACGTCATTTGAAAAAAGTTTGTTGCTCATGAGTGAGCCTTTTAAAGGATACAGGTATAGACAACTTATTGGGCGTGTATCTCGATATGCATTAGATCTGATTGCCGAGGAATTGGAAAGAGTGCAGCAGATAGGATTGGACTCATCAAAGTGTGGATGTCATTTCGTGCAGGTTAAGCTACAAGAAGGTTGTCCTTTGCCAATGGTGAATATCATCTCGTCAACCCACTCTTATCCTCAGGCACGAGCATGTTGGAGAAGAACTCCTGAATGGAAGAGACACCAATATCAATTAGCCACTTGTTCTGTAGGTTATGCTGGCAAGATGATGAACAACATTGGTAATGACCTCATTCATTATAAAGTTACCGACTCAAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTCGAAAGGGACATGCAAATTAAACTAGAGAAACCCCTTCTCATCAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCACATCGCTAATAATGCGTGCTTAATGATTTTTAAGGCCACNANCATAATTATCCACAACATTCGAGTTCACCATTGCAAACCTCAAGCCCCTGGGATTGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCAAGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGTGGTTCTACTGATGTGACTATCTCTAATAATTTGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGATAAGAATATGAAGGTTACAGTGGTGTACAATCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGTCATGGATATGCACACGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTGTAGCACCAACCATAGGAAATAAGGAAGTGACATGGAGAAAGAGTAGTGATAAAAGTGGAGGCACATGGAACTTTCACTCGATAAGAGATATTTTTGAAAATGGAGCTTCCTTCAATACAACAAAAGGAGGAGATGTAAAGAAACCAAACTATACTAAAGAACAAAATTTTAAAGTTCTTGATGCGAAATTCGTGAAATTATTGACACGTTCATCTGGTGTGTTATGA 1548 0.3889 MLVRCTEAWDVLMYAWENVMDCVDESLFAEYVNGLQYASSSWALFFEYVNQTWIIPVESTHASLKSILSNNMGDLSSCWDSIHNFVILQHNKIKTSFEKSLLLMSEPFKGYRYRQLIGRVSRYALDLIAEELERVQQIGLDSSKCGCHFVQVKLQEGCPLPMVNIISSTHSYPQARACWRRTPEWKRHQYQLATCSVGYAGKMMNNIGNDLIHYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFERDMQIKLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATXIIIHNIRVHHCKPQAPGIVMGPEGKVIPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNLFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKSGGTWNFHSIRDIFENGASFNTTKGGDVKKPNYTKEQNFKVLDAKFVKLLTRSSGVL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1729 515 PRINTS Pollen allergen Amb family signature 195 212 IPR018082 -
Vra1g1729 515 PRINTS Pollen allergen Amb family signature 257 273 IPR018082 -
Vra1g1729 515 PRINTS Pollen allergen Amb family signature 321 342 IPR018082 -
Vra1g1729 515 PRINTS Pollen allergen Amb family signature 401 420 IPR018082 -
Vra1g1729 515 PRINTS Pollen allergen Amb family signature 423 442 IPR018082 -
Vra1g1729 515 PRINTS Pollen allergen Amb family signature 463 487 IPR018082 -
Vra1g1729 515 PRINTS Pollen allergen Amb family signature 494 515 IPR018082 -
Vra1g1729 515 PANTHER PECTATE LYASE 18-RELATED 177 515 IPR045032 GO:0030570
Vra1g1729 515 Pfam Pectate lyase 258 440 IPR002022 -
Vra1g1729 515 PANTHER PECTATE LYASE 177 515 - -
Vra1g1729 515 SMART amb_all 249 446 IPR002022 -
Vra1g1729 515 Gene3D - 174 515 IPR012334 -
Vra1g1729 515 SUPERFAMILY Pectin lyase-like 195 482 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1729 Vra-Chr1 32659968 32663868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1729 203 450 Polysaccharide Lyase AT5G09280 71.371 6.13e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1729 K01728 - gmx:100780437 600.897