Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1708 ATGGAACAGAAACACGTTCTGTTGTCAGCATTGAGCGTTGGGGTTGGGTTGGGTGTGGGGCTTGGGTTGAGTTCCGGACAGAAATGGGTTGGCGGGAATCGTGACTCTGATGAACTTTGTCTGGAGCAGATTATGCAGGAGCTCAAGAAGCTGGTGGTTGAAGGAAGGGATGGAAAACATACATTCGAGGACTTTCCATATTACTTAAGTGAAAGAATTCGTGCTTTGTTGACAAGTGCTGCATATATTCATTTAAAGCATCTTCACTTTTCCAAGCACACCAGGAACCTCTCACCAGCAAGCAGGTCTATTTTGCTATCTGGTCCAGCAGAATCTTACCAGCAAGCGCTTGCCAGAGCTTTAGCTCATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTCTCTGTGAAGTTGCAGAATAAATTTGGATGTTCCCGAAAGATACCGTCTTTGAAAAGGTCAATATCCGAGGCAACCTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCGATGCTTTCTTCACAAGGAGAAACAAGAGGAATTCTGCGTCAACAAAGCAGTGCTGCTGAAAGTTTCAATCCTCCAAAGCTTAGGAGGAATGCTTCTGCTGCATCTGATATAAGTAGCACTGCTTCCCAGGGTGGTCCAACACTTCCAGCACGTTTGAAGCGCACAAGTAGCTTGTGTTTTGATGAGAAGCTCTTTGTGCAGGCACTTTACAAGCTTTTGGTTTCTATCGCAGAAACTAGTTCCATCATTTTATACATAAGGGACGTTGAGAAGCTCGTTCTTCAACCAAGGTTATATAATTTACTACAAAAAATGATAAAGAAACTATCAGGCTCAGTGTTGATACTTGGGTCCCAGATATTAGATTCAGATGACGATTGCAAAGAAGTTGATGAAAGGCTCACTGCACTGTTCCCCTACAACATTGAAATCAAAGCTCCTGAAGATGAAACTCATTCTGGCAATTGGAAAGGATCACTGGAAGAGGACATGAAAGCTATTCAGTTCCAAGATAACAGAAACCACATTGCTGAAGTACTAGCAGCAAATGACATTGAATGTGATGACTTGAACGCAATCTGCCATTCAGACACTATCGTACTCAGCAATTATATTGAAGAAATTGTAGTATCTGCAATATCTTACCATTTGATGCATACCAAGGATCCAGAATACCGAAATGGAAAGCTTGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAACGAATCTAACAAGGAAAATGCTGGGGAAGATGTTGCTGGTGCAAAGAATGAAGTTAAGAGTGACAATCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATCCCGGTAACAAAGAAAGAAGGTGAAAATCCTACACCTTCAAAGACGGAAATTCCTGACAATGAGTTTGAGAAGCGCATAAGACCTGAGGTTATCCCAGCAAATGAAATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTCCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCTGACCTCTTCAGAGGTGGGCTTCTAAAGCCGTGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGGAAAACAATGCTAGCAAAAGCCATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATGTCCACTATTACATCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTATTCACGCTGGCAGCTAAGGTTGCCCCAACAATCATCTTTGTTGACGAGGTCGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCCATGAGGAAGATAAAAAATGAGTTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCTGCAACCAACAGACCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGGGTCCTGGTTGGTCTTCCATCTGCTGAGAACAGGGAGAAGATCTTGAAGACTCTTCTGGCCAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCGGGAGAGAGTAAAAGAAATGGAAAAGAAGAAAAGAGAGGCTGAAGGCCAAAACTCTGAGGATGTTTCAAACAATAAAGATAACGAAGACCAAGAAATTACCCTCAGGCCTTTAAATATGGAAGACATGAAGCAGGCCAAGAGTCAGGTGGCTGCAAGTTTTGCATCAGAAGGATCCGTAATGAATGAGTTGAAGCAGTGGAATGATTTATATGGAGAAGGAGGTTCAAGGAAGAAGCAACAACTCACTTACTTCCTTTAG 2451 0.4247 MEQKHVLLSALSVGVGLGVGLGLSSGQKWVGGNRDSDELCLEQIMQELKKLVVEGRDGKHTFEDFPYYLSERIRALLTSAAYIHLKHLHFSKHTRNLSPASRSILLSGPAESYQQALARALAHYFESKLLLLDITDFSVKLQNKFGCSRKIPSLKRSISEATLERMSGLFGSFSMLSSQGETRGILRQQSSAAESFNPPKLRRNASAASDISSTASQGGPTLPARLKRTSSLCFDEKLFVQALYKLLVSIAETSSIILYIRDVEKLVLQPRLYNLLQKMIKKLSGSVLILGSQILDSDDDCKEVDERLTALFPYNIEIKAPEDETHSGNWKGSLEEDMKAIQFQDNRNHIAEVLAANDIECDDLNAICHSDTIVLSNYIEEIVVSAISYHLMHTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDVAGAKNEVKSDNQAPENKSETEKSIPVTKKEGENPTPSKTEIPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFRGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRVLVGLPSAENREKILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQRERVKEMEKKKREAEGQNSEDVSNNKDNEDQEITLRPLNMEDMKQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1708 816 Coils Coil 427 447 - -
Vra1g1708 816 MobiDBLite consensus disorder prediction 433 488 - -
Vra1g1708 816 MobiDBLite consensus disorder prediction 738 761 - -
Vra1g1708 816 MobiDBLite consensus disorder prediction 206 222 - -
Vra1g1708 816 MobiDBLite consensus disorder prediction 422 488 - -
Vra1g1708 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 735 IPR027417 -
Vra1g1708 816 SMART AAA_5 539 676 IPR003593 -
Vra1g1708 816 CDD AAA 541 674 - -
Vra1g1708 816 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 816 - -
Vra1g1708 816 ProSitePatterns AAA-protein family signature. 646 665 IPR003960 GO:0005524|GO:0016887
Vra1g1708 816 Gene3D - 502 784 IPR027417 -
Vra1g1708 816 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 816 - -
Vra1g1708 816 Pfam AAA+ lid domain 695 737 IPR041569 -
Vra1g1708 816 Pfam ATPase family associated with various cellular activities (AAA) 543 673 IPR003959 GO:0005524|GO:0016887
Vra1g1708 816 MobiDBLite consensus disorder prediction 187 222 - -
Vra1g1708 816 Coils Coil 734 754 - -
Vra1g1708 816 Gene3D - 675 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1708 Vra-Chr1 31724838 31732394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1708 503 734 Calmodulin-binding Proteins AT3G56690 38.983 7.40e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1708 - - gmx:100817952 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1708 1 31724838 31732394 Vra8g2186 8 40255211 40262738 PCT