Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1684 ATGGCATTTCTTAAACCTCAATACTTATTTTTGGCTCTTTTGATTTTCTTTTTCCTTTCAAAACTTAGTTTTGCAAAGCGATCAAGGATAAATGGTTTGAAATTGAATGTTATTGACCGATGCTGGAGAAAAAATCATGAATTAAGGGGACATCAATATCAATTAGCCACATGTTCTGTGGGTTATGCTGGCAAGATGATAAACAACATTGGTAATGATCTCATTCATTATAAAGTTACTGACTCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAGCTTCTATTATTCAAGGTAAAGTGTGGATCACATTCCAAAGGGACATGCAAATTAAACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTTCACATCGCTAATAATGCATGCTTAATGATCTTTAAGGCCACCAACATAATTATCCATGGCATTCGAGTTCACCATTGCAAACCTCAAGCCCCTGGGATCGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCATGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGAGGTTCTACTAATGTGACTATCTCTAATAATTGGTTTAAAAACCAAGATAAGGTTATACTTCTTGGACATGATGATGGATATGTAAGAGATAAGAATATGAAGGTTACAATGGTGTATAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACACGTCGCCAACAACTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTGTAGCACCAACTATAGGAAATAAGGAGGTGACATGGAGAAAGAGTAGTGATAAAAGTGGAGGTATATGGAACTTTCATTCGATAAGGGATATTTTTGAAAATGGAGCTTCCTTCAATGTAACGAAAGGAGAAGGTGTGAAAAAGCCAAATTATACTAAAGAACAAAATTTTAAAGTTCTAGATGCCAAATTTGTAAGATTATTGACACGTTCATCTGGTGTGTTACAATACAATAAAAGTTATGTATACTGA 1161 0.3618 MAFLKPQYLFLALLIFFFLSKLSFAKRSRINGLKLNVIDRCWRKNHELRGHQYQLATCSVGYAGKMINNIGNDLIHYKVTDSSDDPINPKPNTLRYGASIIQGKVWITFQRDMQIKLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFKNQDKVILLGHDDGYVRDKNMKVTMVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKSGGIWNFHSIRDIFENGASFNVTKGEGVKKPNYTKEQNFKVLDAKFVRLLTRSSGVLQYNKSYVY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1684 386 SUPERFAMILY Pectin lyase-like 58 342 IPR011050 -
Vra1g1684 386 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Vra1g1684 386 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Vra1g1684 386 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Vra1g1684 386 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Vra1g1684 386 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Vra1g1684 386 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Vra1g1684 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Vra1g1684 386 PANTHER PECTATE LYASE 5 382 - -
Vra1g1684 386 Pfam Pectate lyase 122 303 IPR002022 -
Vra1g1684 386 PANTHER PECTATE LYASE 18-RELATED 5 382 IPR045032 GO:0030570
Vra1g1684 386 Gene3D - 35 379 IPR012334 -
Vra1g1684 386 SMART amb_all 112 309 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1684 Vra-Chr1 30737399 30738885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1684 66 313 Polysaccharide Lyase AT5G09280 71.774 1.34e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1684 K01728 - gmx:100780437 632.484