Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1674 ATGGAAGATTTTTGGAGCAAGATTTGTGGTGATTCTGTTGGTTCAAAGACTACGGGAAAGCTTTCGTGTTATGATTTCAAGTTTCTGAAAGATCCTTCCTTATGCATCAACCATTTATTGATAATATCCTTTGATGCGTTACTCTTGATCATGTTGACTTTCGCTATGATCTACAAGTCTTTCTCGAGACCATGTCAGGGTCTAATCCAAGTGGAAAGATATTCAAAATTGCAACTGTGTTCTGCCATAACTAGTGGCTCTCTTGGGTTGTTGAATTTGTGTTTAGGCATTTGGGTTTTGGAGGAGAAGTTAAGGAAAAGCAATACTACTTTCCCCCTTCACTGGTGGCTACTAGAAATTTTTCAGGGATTCACATGGTTGTTTGTGGGATTAACTGTAAGTCTCAAGCTGAAACAACTTTCAAGAGTATGGTTATGGTTGTTCTCTATATTGACATTCTTTGTTAATGGTATTGTCTGTCTTTTATCCATGTCTTACTTAATTACCAGCAGAGAACTATCCTTCAAGATTGTTTTAGATGTTCTATCTCTTCTTGGAGCCTTTCTACTACTTTCATGCACATATAGTGTATGTAAAATTGAAGACACAAACAGAGAAACTAGAGAAGGCCTTTATGCCCCTTTAAGCGACCAGTTCAATGGAGTTGATTCTAATAGGTATGTAACCCCATTTGCAAAAGCTGGATTCTGTAGTAGGATGTTGTTTTGGTGGTTGAATCCACTTATGGAAAAGGGTCAAGAGAAAACCCTTGAGGATGAGGATATCCCAAAGTTGGGAGAGTCGGATCAAGCAGAAAGTTGTTATCTATTGTTTCAAGAACGCTTGAATAAACAGATAGAAAAAGATCCATCGTCACCTGTGTCAATTTTGTGGATAATAATTATCTGCCATCAAAAAGAGATTTTGATATCAGGATTCTTTGCATTGCTTAAGGTGGTGACTGTGTCTTGTGGTCCTGTACTTCTAAATGCCTTTATACTGGTAGCTGAGGGTAATGAAAGTTTTAAGTATGAAGGCTATGTATTGGTCATATCACTTTTCATTATAAAGGTCATAGAGTCCCTATCCCAAAGGCAGTGGTACTTCCGCAGTAGACTTATAGGGATGAAAGTTAGGTCATTGCTTACTGCAGCCATTTATAAAAAACTGTTGAGGTTGTCCAATGTTGCGAGATTGACACACTCTGGTGGGGAGATAATGAATTATGTGACTGTGGATACTTACAGAATTGGAGAATTTCCATTTTGGTTTCACCAAACATGGACTACAAGTCTCCAACTATGTTTTGCATTAGTAATACTTTTTCGTGCCATTGGGATGGCAACTATTGCCTCATTGGTGGTGATAGTTCTCACTGTGTTGTGCAATACTCCAATAGCTAAGTTACAACACAAGTTTCAGACAGAACTTATGGTGTCACAAGATGAGAGATTGAAGGCTATTTCTGAAGCTCTTTNGAATATGAAAGTTCTAAAGNTATATGCATGGGAAAATCATTTTAAAAATGCTATAGAGAAGTTAAGAAAAGAGGAACTCAAATTGTTAGCTGCAGTGCAACTACGAAAGGCATACAACGTAATTATCTTTTGGTCTTCGCCTGTTTTGGTTTCTGCTGCTTCTTTTGGGGTGTGTTACTTCCTTAAAGTTCCATTGCATGCAAATAATGTTTTCACATTTGTAGCAGCTCTACGGATTGTGCAAGAGCCAATTACAACCATCCCAGATGTTATCGGGGTGGTTATTCAAGCTAAGGTTGCATTTACTCGAATTATTAAGTTCCTTGAGGCACCTGAACTACGAAGTAACAGTTTTAGNAAAAAGAGCTTTGTTANCAATATTAATGACTCAATTATAATCAAACATGCCGATTTTTCGTGGGAAGATAATGTATTAAAGCCAACATTGAGGAACATAAATCTGGAGATTAAACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGAAAATCAACCCTCTTGTCACTGATTCTTGGAGAGGTTCCTATCACAAAAGGAACTATAGACATTTATGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGTACTGTAAGGGAAAATATTTTGTTTGGGTCGGAATTAGATGCTGAAAGATATCAAGAAACACTTCATAGATCTTCACTAGTGAAGGACCTGGAGTTGTTTCCCAATGGTGACCTAACAGAAATAGGTGAGAGAGGAGTTACCTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTTTTTATCAGAATGCTGATATATATCTTTTGGATGATCCATTCAGTGCTGTTGATGCCCATACTGCCACAAATTTATTTAATGTAATGTCATTTTCCTTTTTTCTCATGCTGCATTTATATTGTAAGGGTCGTTTTTTACTTCAACATGGCTTTGAAATATGGCAGGATTACATCATGGAAGGACTTAAAGAGAAAACGGTATTAGTAGTAACCCATCAAGTTGACTTCCTACCAGCATTTGATTATGTTTTGTTAATTTCAAAGGGGGAAATCCTTGAAGTTGCTCCTTATCATCATCTATTGAGCTCAAGTAAGGAATTCCAGAACCTCGTCAATGCTCACAAGAAGATGGCTGGTTCTAACGAGCTTGTGAATGTTACTTTTTCCAAGAGATATCCAACTTCTGTTAGAGAGATTAGACAAGCTTTCATGAAAAACCAATTCAACATAGCACAGAGTAAATTAATAAAGCAGGAAGAGAGAGAGATAGGAGACACTGGCTTGAAGCCTTACTTACAATATCTGAATCAAATGAAGTGCTATATACTCTTCTCTGTTGCTGCTCTTTGTCACCTTGCATTTTCAATTTTCCAAATATTGCAAAACTTATGGATGGCTACAAATGTTGATAACCATCATGTCAGCACGTTGCGGTTGATAGTAGTTTACTTCTTGATTGGAGTTATTTCGATACTTTTCATGTTCATTAGAANTNTNAGTCTTGTTTNTTTGGGGTTTCTNTCATCAAAGTATCTTTTTCTACAATTAATGAACTCACTATTTCGTGCACCAATGTCTTTTTATGACTCTACACCATTAGGAAGGATACTGAGTAGGGTTTCATCAGATCTTAGCATTGTGGACCTTGATATTCCATTTAGCCTCACCTTTACTGTGGGAGCAACAATAAACGCTTATTCAACTCTGATAGTTTTAGCAGTTGTCACTTGGCCAGTCTTGGTTATCTCAATAGCATTAGTTTATATTTCAATTCGCTTGCAGAGATATTACTTTGCCTCTGCTAAAGAAGTAATGCGGATGAATGGCACAACAAAATCCTTTGTGGCTAATCATATTGCTGAAACTGTTGCTGGAGTTGTGACAATAAGGGCTTTTGAGGAGGAATATCGTTATTTTGTAAAGAATCTTGATTTGATTGACATCAATGCTAGTTGTTTCTTCCATAGTTTTGCCTCGAATGAGTGGTTGATCCTACATTTAGAAACTGCAGCTGCAGTTGTACTTTCCTTCTCAGCACTTTGCATGGTCTTGTTTCCACCTGGGACTTTTACATCTGGATTTATTGGCATGGTTCTCTCTTATGGCCTTACACTAAGCTTTTCCTTAGTATTTTCAATTCAAAGTCAATGCAGCCTTGCAAATTACGTAGTATCTATAGAGAGGTTAAATCAGTATATGCATATACAAAGTGAGGCAGCAGAAGTAATAGAAACAAAACGCCCTCCTTTTAATTGGCCAGATAAAGGTGAAATAGAAATAAATGACTTGCAGGTACGATACAGGCCTGATGGACCCCTTATACTTCATGGAATCACATGCACATTCAAAGCAGGACACAAGGTTGGAATTGTTGGCAGAACAGGCAGTGGAAAGTCCACTCTTATTGGTTCTTTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTGTTGTGGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGAACTGTTAGATTCAATTTGGACCCTTTGTCTCAACACTCTGATAAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGAGAAAGAAGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGCTCAAACTGGAGCATGGGACAGAGGCAGCTGTTTTGTTTGGGGCGTGCTATTTTGAGAAGTAGTAAGATATTGGTGTTGGATGAAGCCACAGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTGCTGATTGTACAGTAATAACAGTTGCACACAGAATACCAACTGTGATGGATTCCACTGTGGTTCTTTCAATCAGTGATGGAAAATTGGTGGAGTATGATGAACCAAACACCTTGATGAAGACAGAAGGGTCATTATTCAGACAACTTGTCCGAGAATATTGGTCTCATTTTCTCTCTTCAGAATCCCATTGA 4521 0.3798 MEDFWSKICGDSVGSKTTGKLSCYDFKFLKDPSLCINHLLIISFDALLLIMLTFAMIYKSFSRPCQGLIQVERYSKLQLCSAITSGSLGLLNLCLGIWVLEEKLRKSNTTFPLHWWLLEIFQGFTWLFVGLTVSLKLKQLSRVWLWLFSILTFFVNGIVCLLSMSYLITSRELSFKIVLDVLSLLGAFLLLSCTYSVCKIEDTNRETREGLYAPLSDQFNGVDSNRYVTPFAKAGFCSRMLFWWLNPLMEKGQEKTLEDEDIPKLGESDQAESCYLLFQERLNKQIEKDPSSPVSILWIIIICHQKEILISGFFALLKVVTVSCGPVLLNAFILVAEGNESFKYEGYVLVISLFIIKVIESLSQRQWYFRSRLIGMKVRSLLTAAIYKKLLRLSNVARLTHSGGEIMNYVTVDTYRIGEFPFWFHQTWTTSLQLCFALVILFRAIGMATIASLVVIVLTVLCNTPIAKLQHKFQTELMVSQDERLKAISEALXNMKVLKXYAWENHFKNAIEKLRKEELKLLAAVQLRKAYNVIIFWSSPVLVSAASFGVCYFLKVPLHANNVFTFVAALRIVQEPITTIPDVIGVVIQAKVAFTRIIKFLEAPELRSNSFXKKSFVXNINDSIIIKHADFSWEDNVLKPTLRNINLEIKHGQKVAICGEVGSGKSTLLSLILGEVPITKGTIDIYGKFAYVSQTAWIQTGTVRENILFGSELDAERYQETLHRSSLVKDLELFPNGDLTEIGERGVTLSGGQKQRIQLARAFYQNADIYLLDDPFSAVDAHTATNLFNVMSFSFFLMLHLYCKGRFLLQHGFEIWQDYIMEGLKEKTVLVVTHQVDFLPAFDYVLLISKGEILEVAPYHHLLSSSKEFQNLVNAHKKMAGSNELVNVTFSKRYPTSVREIRQAFMKNQFNIAQSKLIKQEEREIGDTGLKPYLQYLNQMKCYILFSVAALCHLAFSIFQILQNLWMATNVDNHHVSTLRLIVVYFLIGVISILFMFIRXXSLVXLGFLSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLTFTVGATINAYSTLIVLAVVTWPVLVISIALVYISIRLQRYYFASAKEVMRMNGTTKSFVANHIAETVAGVVTIRAFEEEYRYFVKNLDLIDINASCFFHSFASNEWLILHLETAAAVVLSFSALCMVLFPPGTFTSGFIGMVLSYGLTLSFSLVFSIQSQCSLANYVVSIERLNQYMHIQSEAAEVIETKRPPFNWPDKGEIEINDLQVRYRPDGPLILHGITCTFKAGHKVGIVGRTGSGKSTLIGSLFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRFNLDPLSQHSDKEIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRAILRSSKILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDSTVVLSISDGKLVEYDEPNTLMKTEGSLFRQLVREYWSHFLSSESH* 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1674 1506 Gene3D ABC transporter type 1, transmembrane domain 279 602 IPR036640 GO:0005524|GO:0016021
Vra1g1674 1506 Gene3D ABC transporter type 1, transmembrane domain 909 1241 IPR036640 GO:0005524|GO:0016021
Vra1g1674 1506 Pfam ABC transporter 1277 1425 IPR003439 GO:0005524
Vra1g1674 1506 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Vra1g1674 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1494 IPR003439 GO:0005524
Vra1g1674 1506 Pfam ABC transporter transmembrane region 309 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1674 1506 Pfam ABC transporter transmembrane region 944 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1674 1506 Gene3D - 603 893 IPR027417 -
Vra1g1674 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1493 IPR027417 -
Vra1g1674 1506 CDD ABCC_MRP_domain1 624 852 - -
Vra1g1674 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 948 1223 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1674 1506 CDD ABCC_MRP_domain2 1258 1478 - -
Vra1g1674 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 875 IPR027417 -
Vra1g1674 1506 SUPERFAMILY ABC transporter transmembrane region 301 605 IPR036640 GO:0005524|GO:0016021
Vra1g1674 1506 Gene3D - 1243 1495 IPR027417 -
Vra1g1674 1506 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 70 789 - -
Vra1g1674 1506 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 814 1506 - -
Vra1g1674 1506 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 814 1506 - -
Vra1g1674 1506 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 70 789 - -
Vra1g1674 1506 CDD ABC_6TM_ABCC_D2 946 1235 IPR044726 GO:0140359
Vra1g1674 1506 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Vra1g1674 1506 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Vra1g1674 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1674 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 875 IPR003439 GO:0005524
Vra1g1674 1506 SMART AAA_5 1286 1478 IPR003593 -
Vra1g1674 1506 SMART AAA_5 651 852 IPR003593 -
Vra1g1674 1506 SUPERFAMILY ABC transporter transmembrane region 933 1243 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1674 Vra-Chr1 30585201 30592256 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1674 575 868 Calmodulin-binding Proteins AT2G36910 27.331 5.00e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1674 K05666 - gmx:100787314 2227.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1674 1 30585201 30592256 Vra8g2172 8 40091636 40099376 PCT