Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1669 ATGGAGGATTTTTGGAGCATGGCTTGTGGAGAAACTGATTGTCTCGGGAATGGAGGAAAACCACCCTTCTGTTACGATTTCAAGTTTTTGAAAGATCCTTCTACGTGCACCATTCGATTCTTGATCATCTGCTTTGATGTTTTGCTACTGATCATGCTAGCATTCATTTTGATACAGAAGTCTTTGTTCAAACCACTTCGTGGTCAGTTTCAGGTGGAAAGATATTCAAAGTTGCAGCTAGTTTCAGCCATAAACAATGGTTTTCTGGGGCTGTTGTATGTGTGCTTAGGCATTTGGATTTTAGAGGAGGAATTAAGAAAGAGACACACTCTCTTCCCTCTAAAGTTGTGGTTGGCAGAGCTTTTTCAAGGATTCAGATGGCTTTTTGTAGGCCTAAGTGTAAGTCTTCAGGTGAAACAACTTCCAAGACCATGGTTGTGGTTGTTTTCTCTTGTTACGTTTTTTGTTTCATTTATCTTCTGTGTTCTATCCATGTCTTACGCAATTAGTAGCAGAAAATTGACCTTCAAGGAAGCTTTCGACTTTCTGTCTTTTCCAGGATCAGTTTTGCTTCTCTTGTGTACTTATAAAGTACATAAACGTGACGGAGAAATTGATGAAGGCCTTTACGACCCTTTGAATGATCACTGTAGTGAGGTTGATCCAGATAATTATGTGACTCCATTTGCCAAAGCTGGATTCCTCAGTAAGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATACCCAAGTTGCGAGAATCAGATCGAACAGAAAGTTGCTACTTGTCCTTTTTAGAACTTTTGAACAGAGAAAAAGGAAAAGAACCATTCTCACAATCATCTTTGCTGTGGACCATAGTTTGGTGCCACAAGAGAGAGATTTTGATGACTGGATTCTTTGCTCTGCTCAAGGTACTCACCTTGTCCACTGGTCCTGTACTTCTGAATGCTTTTATATTAGTTTCTGAGGGTAATGGAAGTTTCAAATATGAGGGTTATGTATTGGTCATAGTACTTTTCATCATAAAGATCATCGAGTCCCTGTCTCAAAGACAGTGGTATTTCCGCAGTAGGCTTGTTGGAATGAAAGTTAGATCACTGCTTACTGCAGCCATTTATAAAAAATTATTGAGGTTATCTAGTGCAGCTAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTTCCGTATTGGTTTCACCAGTCATGGACAACAAGCCTCCAAATATGTATTGCTATAGTTATACTTTTTGATGCTATTGGAATAGCCACAATATCCTCATTGCTGGTGATTGTCCTCACTGTGCTTTGCAACGCTCCACTAGCAAAGTTGCAGCATAACCTTCAGAGCCAACTCATGGTGGCACAAGATGAGCGATTGAAGGCGAGTTCTGAGGCTCTTACAAATATGAAAGTGCTGAAGCTCTATGCATGGGAAACTCATTTCAGAAAGGCTATAGAAAGACTTAGGAATTTGGAACTGAAAATTTTACGTTCAGTGCAGCTGAAAAAGGCGTACAACATCTTTCTTTTTTGGTCCTCACCGATTTTGGTCTCTGCTGCTTCTTTTGGGACATGTTACTTCTTGAATATTCCTCTGCATGCAAATAATCTTTTCACATTTGTGGCCACCATACGCCTTGTGCAGGAGCCAATTACAGCCATCCCAGATGTTATTGGAGTGGTCATTCAAGCAAAAGTGGCATTTTACCGGATTATTCAGTTCCTTAATGCACCTGAATTGCAAAGTGTAAATTTCAGGAATAAAAGTTTTGATGGCAGTAAAGGATCAATTACAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGAATCAAAGTCAACACTGAGGAACATAAACTTGGAGATCAGACAAGGGCAAAAGTTTGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTGGCTACAATTCTTGGAGAGGTTCCAAGGATTAAAGGAACTATTGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACANACNGGNACNNTACGGGAAAATATTTTGTTTGGATCAGATTTGGATGCTCATAGATATCAAGAAACACTTCATAGATCATCACTACTAAAGGATTTGGAGCTGTTTCCCCATGGAGACCTCACACAAATAGGTGAGAGAGGTGTTAACTTGAGTGGAGGCCAGAAGCAGCGAATTCAACTTGCGCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACAGACTGCCACAAATTTGTTTAATGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTAACTCATCAAGTTGACTTTCTACCAGCGTTTGATTCTGTTTTGATGATGTCAAATGGGGAAATCCTAGAATCTGCTCCTTATCATCATTTGTTGTCCACAAGCCAAGAATTCCAAGATCTTGTTAATGCTCACAAGAAAACTGCTGGTTCTAACAATCCTATGAATGTTTCTTCTTCCAAGAGGCCTTCAATATCTGCTAAAGAGATTACACAAGCTTTCAAGGAGAACCAATCAAAAGACACATATGGAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACGGGGTTGAAGCCTTACTTGCAGTATTTGAATCAGACGAAAGGCTATGTATACTTCTTTGTGACTTCTCTTTGTCACCTCTTGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATAACAAAGTTAGCACATTGCAGCTGATTGTTGTTTACTTCATGATTGGGGTTCTTTCTACTGTTTTTTTGCTGATCAGAACTGTACTTCTAGTTTCCTTGGGCATTCAATCATCAAAATATATATTTTTACAGTTAATGAACTCCCTTTTCCGTGCACCGATGTCCTTTTATGACTCTACACCATTGGGAAGAATACTTAGTAGGGTCTCATCAGATCTAAGCATTATGGATATTGATATCCCTTTTATTATTGCTTATACTGTGGGAGGTACTACAAACTTCTATACCAACCTCATAGTTTTAGCAATTATCACTTGGCAAATCTTGTTTATCGCTGTACCGATGGTTTACATTGCAATACGCTTGCAGAAATACTATTTTTCCACTGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAGTCCTTTGTAGCTAATCATCTAGCTGAAACTAATGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGACGATCGTTTCTTTGAGAAGAGTCTTGATCTAATTGACATCAATGCTAGTCCCTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATTCAGAGATTGGAAATAGTCAGTGCAGTGCTTCTTTCCTCCACAGCTCTATGCATGGTTACACTTCCACCAGGGACTTTCAGCTCTGGATTCATTGGCATGGCTCTATCTTATGGACTTACACTAAATGCTCAACTAGTATTTTCAATTCAGAGTCAATGCAATCTAGCAAATTACATAATTTCTGTGGAGAGGCTAAATCAGTATATGCATATAGCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAACTAAAAGACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTTCATGGAATCACATGCACATTCAAAGCAGGACACAAGATTGGAATCGTTGGAAGAACAGGCAGTGGAAAGTCCACTCTTATCAGTGCATTATTTCGTCTGGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCAATTGGCCTTCATGATTTGAGGTCACGTTTTGGAGTTATACCTCAGGATCCTACCCTTTTTCATGGAACTGTTAGATATAATTTAGACCCTTTATCTCAATACTCTGATCAGGAGATATGGGAGGTTCTTGGGAAATGTCAGTTACGAGAAGTTGTCCAAGAGAAATTTGAGGGTCTAAACTCCCCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAGAGGCAATTATTTTGTCTGGGGCGTGCACTTTTAAGGAGAAGTAGGATATTGGTGTTGGATGAAGCTACTGCATCAATTGACAATGCAACTGATTTGATTCTACAGAAAACAATCAGGACTGAGTTTGCAGATTGCACAGTGATTACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAGTTGGTGGAGTATGATGAACCAAGGAAGTTGATGGCGAAAGAAGGATCGCTGTTCAAGCAACTTGTGAAGGAGTACTGGTCTCATTTCCAATCTGCAGAATCACATTGA 4431 0.3968 MEDFWSMACGETDCLGNGGKPPFCYDFKFLKDPSTCTIRFLIICFDVLLLIMLAFILIQKSLFKPLRGQFQVERYSKLQLVSAINNGFLGLLYVCLGIWILEEELRKRHTLFPLKLWLAELFQGFRWLFVGLSVSLQVKQLPRPWLWLFSLVTFFVSFIFCVLSMSYAISSRKLTFKEAFDFLSFPGSVLLLLCTYKVHKRDGEIDEGLYDPLNDHCSEVDPDNYVTPFAKAGFLSKMSFWWLNPLMKRGQEKTLQDEDIPKLRESDRTESCYLSFLELLNREKGKEPFSQSSLLWTIVWCHKREILMTGFFALLKVLTLSTGPVLLNAFILVSEGNGSFKYEGYVLVIVLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNYVTVDAYRIGEFPYWFHQSWTTSLQICIAIVILFDAIGIATISSLLVIVLTVLCNAPLAKLQHNLQSQLMVAQDERLKASSEALTNMKVLKLYAWETHFRKAIERLRNLELKILRSVQLKKAYNIFLFWSSPILVSAASFGTCYFLNIPLHANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFYRIIQFLNAPELQSVNFRNKSFDGSKGSITIKSADFSWEGNESKSTLRNINLEIRQGQKFAICGEVGSGKSTLLATILGEVPRIKGTIEVYGKFAYVSQTAWIXTGTXRENILFGSDLDAHRYQETLHRSSLLKDLELFPHGDLTQIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAQTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLMMSNGEILESAPYHHLLSTSQEFQDLVNAHKKTAGSNNPMNVSSSKRPSISAKEITQAFKENQSKDTYGNQLIKEEEREIGDTGLKPYLQYLNQTKGYVYFFVTSLCHLLFVICQILQNSWMAANVDNNKVSTLQLIVVYFMIGVLSTVFLLIRTVLLVSLGIQSSKYIFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDIDIPFIIAYTVGGTTNFYTNLIVLAIITWQILFIAVPMVYIAIRLQKYYFSTAKEVMRMNGTTKSFVANHLAETNAGVVTIRAFEEDDRFFEKSLDLIDINASPFFHSFASNEWLIQRLEIVSAVLLSSTALCMVTLPPGTFSSGFIGMALSYGLTLNAQLVFSIQSQCNLANYIISVERLNQYMHIASEAPEVIEGNRPPSNWPVAGKVELKDLQVRYRPDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFHGTVRYNLDPLSQYSDQEIWEVLGKCQLREVVQEKFEGLNSPVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPRKLMAKEGSLFKQLVKEYWSHFQSAESH* 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1669 1476 Pfam ABC transporter 1247 1395 IPR003439 GO:0005524
Vra1g1669 1476 Pfam ABC transporter 639 773 IPR003439 GO:0005524
Vra1g1669 1476 Gene3D ABC transporter type 1, transmembrane domain 294 596 IPR036640 GO:0005524|GO:0016021
Vra1g1669 1476 CDD ABC_6TM_ABCC_D2 916 1205 IPR044726 GO:0140359
Vra1g1669 1476 SUPERFAMILY ABC transporter transmembrane region 912 1213 IPR036640 GO:0005524|GO:0016021
Vra1g1669 1476 SUPERFAMILY ABC transporter transmembrane region 295 595 IPR036640 GO:0005524|GO:0016021
Vra1g1669 1476 Gene3D - 1214 1465 IPR027417 -
Vra1g1669 1476 SMART AAA_5 1256 1448 IPR003593 -
Vra1g1669 1476 SMART AAA_5 648 821 IPR003593 -
Vra1g1669 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1669 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 844 IPR027417 -
Vra1g1669 1476 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 71 1476 - -
Vra1g1669 1476 CDD ABC_6TM_ABCC_D1 309 595 IPR044746 GO:0140359
Vra1g1669 1476 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 71 1476 - -
Vra1g1669 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1220 1462 IPR027417 -
Vra1g1669 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1193 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1669 1476 Gene3D ABC transporter type 1, transmembrane domain 878 1211 IPR036640 GO:0005524|GO:0016021
Vra1g1669 1476 Pfam ABC transporter transmembrane region 307 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1669 1476 Pfam ABC transporter transmembrane region 915 1157 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1669 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1230 1464 IPR003439 GO:0005524
Vra1g1669 1476 CDD ABCC_MRP_domain1 621 821 - -
Vra1g1669 1476 Gene3D - 597 865 IPR027417 -
Vra1g1669 1476 CDD ABCC_MRP_domain2 1228 1448 - -
Vra1g1669 1476 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524
Vra1g1669 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 844 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1669 Vra-Chr1 30353620 30359948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1669 593 884 Calmodulin-binding Proteins AT2G36910 28.296 1.57e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1669 K05666 - gmx:100787314 2593.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1669 1 30353620 30359948 Vra8g2171 8 40079431 40086288 PCT