Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1668 ATGACAGAGTTTAAGCAGCAAAGAGAACATACAATGATGAAGGAATTTTGGAGCATGTTTTGTGCAGAAGCTGATTGTCCTGGGACTGGAGGAAAACAACCATTTTGTTTTGATTTGAAGACTTTGAAAGATCCTTCTTCATGCTTCAACCAGTTCTTGATCTTTTGCTTTGATGTGTCGGTGCTGGTCATGCTGGCATTCATTCTGATCCGGAAGAATTTGTTCGGACCATTTCAGGGTATGTTGCAGATGGAAAGATATTCAAACTTGCAGCTAATTTCTTCCATAACCAATGCATCTCTGGGGTTGTTGTATTTGTGCTTAGGCATTTGGGTTTTAGAGGAAAACTTAAGGAAGAGTCACACTCTTTTTCCACTTAATGGGTGGTTGCTAGAACTCTTTGAAGGATTCAGATGGTTGTTAGTAGGATTAAGTGTAAGTCTTAAGCTGAAACAACTTCCAAGGTCATGGTTGTGGTTGTTTTCACTTATTACACTATTTCTTTCGAGTATTTTCTGTGTTTTGTCCGTGTCTTATGCAATTTGTAGCAGAGAACTGACCTTCAAGGAAGCTTTATATGTTCTATCTTTTCCAGGAGCAGTTTTACTACTCTTGTGCACTTACAAAGCATCAAAATGTGAAGACACTGCTACAAGTATTGATGAAGACTTTTACGAATCTTTAAGCAGCCACTTTGATGAAGTTGATCCTTATAACTACGTAACCCCATATGCTAAAGCTGGATTCTTTAGTAGGATGTCGTTTTGGTGGTTGAATTCATTGATGAAAATTGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCAAAGTTGCCAGAATTGGATCGAGCAGAATATTGTTATTTGTCTTTTATAGAACAGTTGAACAGGCAAAAGGGGAAAGAATCATTGCCACAATCAGCAATTTTGTGGGCAATAGTTTTTTGCCACTGGAAAGATATTTTGATGTCAGGATTGTTTGCATTGCTCAAGGTACTCAGTGTATGTACTGGTCCTGTACTTTTGAATGCTTTTATATCGATTGCTGAGGGTAATGGCAGTTTCAAATATGAGGGCTATGTATTGGTCATGTCACTTTTCATTGCAAAAATCGCAGAGTCCTTATCACAAAGGCAATGGTATTTTCGCACTAGGCTTGTTGGGATGAAGATTAGGTCACTACTTACAGCTTCCATTTATAGAAAAGTATTGAGGTTGTCTAGTGCAGCTAGATTGACACACTCTAATGGTGAGATAATGAATTATGTGACTGTGGATACATACAGAATTGGAGAATTCCCATTTTGGTTTCACCAGACATGGACAACAAGCCTCCAACTATGTATTGCACTTGTAATACTTTTTCGTGCTATTGGCCTAGCAACAATTGCCTCATTGGTGGTGATAGTTCTCACTGTGCTCTGTAATACTCCACTGGCAAAGATGCAGCATAAGTTTCAGAGTAAACTCGTGGTGGCACAAGATGAGAGATTGAAGGTCAGTTCTGAGGCTCTTGTGAATATGAAAGTGCTGAAGCTATATGCGTGGGAAACCCATTTTAAAAATGCTATTGAAACATTAAGAAACGTTGAACTGAAAATTTTAAGTGCTGTACAGCTGAGAAAGGCATACAACATAATTTTATTTTGGATCGCACCTGTTTTGGTGTCTGCTGTTTCTTTTGGGGCATGTTACTTTTTGAACGTTCCTTTACATGCTAACAATGTTTTCACTTTTGTGGCAACTTTACGCCTAGTGCAAGAACCAATTACTGCCATCCCAGATGTTGTTGGGGTGGTCATTCAAGCAAAAGTTGCATTTTCCAGGATTGTTAATTTCCTTGAAGCACCTGAATTACAGAGTGCAAAATTCAGGAATAGGTGTTTTGATGAGTGTAACAAAGGCCGAATTTCAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGTATCAAAGTCAACACTGAGGAACATAAACTTGGAGATCAGACAAGGGCAAAAGTTTGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTGGCTACAATTCTTGGAGAGGTTCCAAGGATTAAAGGAACTATTGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACANACNGGNACNNTACGGGAAAATATTTTGTTTGGATCAGATTTGGATGCTCATAGATATCAAGAAACACTTCATAGATCATCACTACTAAAGGATTTGGAGCTGTTTCCACATGGAGATCTCACTCAAATAGGCGAGAGAGGAGTTAACTTCAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTTTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTAACTCATCAAGTTGACTTTCTACCAGCGTTTGATTCTGTTTTGATGATGTCAAATGGGGAAATCCTAGAATCTGCTCCTTATCATCATTTGTTGTCCACAAGCCAAGAATTCCAAGATCTTGTTAATGCTCACAAGAAAACTGCTGGTTCTAACAATCCTATGAATGTTTCTTCTTCCAAGAGGCCTTCAATATCTGCTAAAGAGATTACACAAGCTTTCAAGGAGAACCAATCAAAAGACACATATGGAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACGGGGTTGAAGCCTTACTTGCAGTATTTGAATCAGACGAAAGGCTATGTATACTTCTTTGTGACTTCTCTTTGTCACCTCTTGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATAACAAAGTTAGCACATTGCAGCTGATTGTTGTTTACTTCATGATTGGGGTTCTTTCTACTGTTTTTTTGCTGATCAGAACTGTACTTCTAGTTTCCTTGGGCATTCAATCATCAAAATATATATTTTTACAGTTAATGAACTCCCTTTTCCGTGCACCGATGTCCTTTTATGACTCTACACCATTGGGAAGAATACTTAGTAGGGTCTCATCAGATCTAAGCATTATGGATATTGATATCCCTTTTATTATTGCTTATACTGTGGGAGGTACTACAAACTTCTATACCAACCTCATAGTTTTAGCAATTATCACTTGGCAAATCTTGTTTATCGCTGTACCGATGGTTTACATTGCAATACGCTTGCAGAAATACTATTTTTCCACTGCAAAAGAATTGATGCGCGTGAATGGCACAACAAAATCATTTGTAGCTAATCATATAGCTGAAACAACTGCTGGAGCTGTGACAATAAGAGCTTTTAAGGAAGAAGATGGCTTTTTCAAGAAGAATCTTGATCTAATTGATATCAATGCTAGTCCCTTCTTTCATAGTTTTGCCTCAAATGAGTGGCTGATTCAGAGATTGGAAATAGTCAGTGCAGTGCTTCTTTCCTCCACAGCTCTATGCATGGTTACACTTCCACCAGGGACTTTCAGCTCTGGATTCATTGGCATGGCTCTATCTTATGGACTTACACTAAATGCTCAACTAGTATTTTCAATTCAGAGTCAATGCAATCTAGCAAATTACATAATTTCTGTGGAGAGGCTAAATCAGTATATGCATATAGCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAACTAAAAGACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTTCATGGAATCACATGCACATTCAAAGCAGGACACAAGATTGGAATAGTTGGAAGAACAGGCAGTGGAAAGTCCACTCTCATCAGTGCATTATTTCGTCTGGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCAATTGGCCTTCATGATTTGAGGTCACGTTTTGGAGTTATACCTCAGGATCCTACCCTTTTTAATGGAACTGTTAGATATAATTTGGACCCTTTATCTCAATACTCTGATAAAGAAATATGGGAGGTTCTTGGGAAGTGTCAGCTGCGAGAAGTTGTACAAGAGAAAGAAGAGGGACTAAACTCCTCAGTTGTGGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTTTGTCTGGGGCGTGCACTGTTAAGGAGAAGTAGGATATTGGTGTTGGATGAAGCTACTGCATCAATTGACAATGCAACTGATTTGGTTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGCACAGTGATCACAGTAGCACACAGAATACCAACCGTGATGGATTGCACTATGGTTCTTTCAATTAGCGATGGAAAATTGGTGGAGTATGATGAACCAGTGAACTTGATGAACAAAGAAGGATCGCTATTCAAGCAGCTTGTTAAGGAGTACTGGTCTCATTTTCATTCAGCAGAATCATACTGA 4479 0.3889 MTEFKQQREHTMMKEFWSMFCAEADCPGTGGKQPFCFDLKTLKDPSSCFNQFLIFCFDVSVLVMLAFILIRKNLFGPFQGMLQMERYSNLQLISSITNASLGLLYLCLGIWVLEENLRKSHTLFPLNGWLLELFEGFRWLLVGLSVSLKLKQLPRSWLWLFSLITLFLSSIFCVLSVSYAICSRELTFKEALYVLSFPGAVLLLLCTYKASKCEDTATSIDEDFYESLSSHFDEVDPYNYVTPYAKAGFFSRMSFWWLNSLMKIGQEKTLQDEDIPKLPELDRAEYCYLSFIEQLNRQKGKESLPQSAILWAIVFCHWKDILMSGLFALLKVLSVCTGPVLLNAFISIAEGNGSFKYEGYVLVMSLFIAKIAESLSQRQWYFRTRLVGMKIRSLLTASIYRKVLRLSSAARLTHSNGEIMNYVTVDTYRIGEFPFWFHQTWTTSLQLCIALVILFRAIGLATIASLVVIVLTVLCNTPLAKMQHKFQSKLVVAQDERLKVSSEALVNMKVLKLYAWETHFKNAIETLRNVELKILSAVQLRKAYNIILFWIAPVLVSAVSFGACYFLNVPLHANNVFTFVATLRLVQEPITAIPDVVGVVIQAKVAFSRIVNFLEAPELQSAKFRNRCFDECNKGRISIKSADFSWEGNVSKSTLRNINLEIRQGQKFAICGEVGSGKSTLLATILGEVPRIKGTIEVYGKFAYVSQTAWIXTGTXRENILFGSDLDAHRYQETLHRSSLLKDLELFPHGDLTQIGERGVNFSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLMMSNGEILESAPYHHLLSTSQEFQDLVNAHKKTAGSNNPMNVSSSKRPSISAKEITQAFKENQSKDTYGNQLIKEEEREIGDTGLKPYLQYLNQTKGYVYFFVTSLCHLLFVICQILQNSWMAANVDNNKVSTLQLIVVYFMIGVLSTVFLLIRTVLLVSLGIQSSKYIFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDIDIPFIIAYTVGGTTNFYTNLIVLAIITWQILFIAVPMVYIAIRLQKYYFSTAKELMRVNGTTKSFVANHIAETTAGAVTIRAFKEEDGFFKKNLDLIDINASPFFHSFASNEWLIQRLEIVSAVLLSSTALCMVTLPPGTFSSGFIGMALSYGLTLNAQLVFSIQSQCNLANYIISVERLNQYMHIASEAPEVIEGNRPPSNWPVAGKVELKDLQVRYRPDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQYSDKEIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLVLQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPVNLMNKEGSLFKQLVKEYWSHFHSAESY* 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1668 1492 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 83 1491 - -
Vra1g1668 1492 Gene3D ABC transporter type 1, transmembrane domain 293 614 IPR036640 GO:0005524|GO:0016021
Vra1g1668 1492 Gene3D ABC transporter type 1, transmembrane domain 894 1227 IPR036640 GO:0005524|GO:0016021
Vra1g1668 1492 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 83 1491 - -
Vra1g1668 1492 SUPERFAMILY ABC transporter transmembrane region 310 615 IPR036640 GO:0005524|GO:0016021
Vra1g1668 1492 CDD ABC_6TM_ABCC_D2 932 1221 IPR044726 GO:0140359
Vra1g1668 1492 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 322 602 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1668 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 860 IPR027417 -
Vra1g1668 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1236 1478 IPR027417 -
Vra1g1668 1492 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524
Vra1g1668 1492 Pfam ABC transporter transmembrane region 322 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1668 1492 Pfam ABC transporter transmembrane region 931 1173 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1668 1492 SUPERFAMILY ABC transporter transmembrane region 928 1229 IPR036640 GO:0005524|GO:0016021
Vra1g1668 1492 Gene3D - 615 881 IPR027417 -
Vra1g1668 1492 CDD ABCC_MRP_domain1 637 837 - -
Vra1g1668 1492 Gene3D - 1230 1482 IPR027417 -
Vra1g1668 1492 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 933 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g1668 1492 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1246 1480 IPR003439 GO:0005524
Vra1g1668 1492 CDD ABC_6TM_ABCC_D1 324 610 IPR044746 GO:0140359
Vra1g1668 1492 SMART AAA_5 664 837 IPR003593 -
Vra1g1668 1492 SMART AAA_5 1272 1464 IPR003593 -
Vra1g1668 1492 Pfam ABC transporter 1263 1411 IPR003439 GO:0005524
Vra1g1668 1492 Pfam ABC transporter 655 789 IPR003439 GO:0005524
Vra1g1668 1492 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 639 860 IPR003439 GO:0005524
Vra1g1668 1492 CDD ABCC_MRP_domain2 1244 1464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1668 Vra-Chr1 30333471 30340269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1668 635 900 Calmodulin-binding Proteins AT2G36910 28.772 5.65e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1668 K05666 - gmx:100787314 2546.93