Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1645 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTTACTCATAAATACGACGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAAAGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGGTATCATCTCGCCACTGCCCGCAACGCCAATCTTATTGATGATTCTGAATCATATGGAGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGAGTATGATGATAGTTTCATTGACGATGACATTGTACCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCTCATGACAACAGACCAAAAATTAAGAAAGGCAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAATCCAGGAAACTGACAATGAAGATAGCCTACCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAAAGAAATGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAAGAANNAGGAAGATGGTGNAAATAATATTTTTGAAACAAATCTAGAGGCTGGACATGTCCTTGTAGATAGTCAGACACATAGGGAAGCTGTGTTATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAGTCCAAAAAAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGATGAAAATGGAAGACATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGGAAACTGAGACCACANATAAAATACTTCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAAGAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCATATCAGTCCTGTTAATCTGCCTCTAAGAAATGGACAACACACAGTTAACGAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAAGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATGTGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACCTTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCAGGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTGTCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATCGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTAACGTCTGAGAGTGATGGACACTCTGACAAAATACCACCAAATTCATGGTTGGTTTATGACATTGAACTAGTTAAAGTTCATTGA 1755 0.4068 MAFWGVEVKPGKPFTHKYDDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGKAESLQLNLELEEVDQVLFSVIGPRSIHLCGYHLATARNANLIDDSESYGEDIADTETERSDYSDEDEYDDSFIDDDIVPEASSPSLISKEEEASHDNRPKIKKGSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQIQETDNEDSLPISSIYKNKASGRVLDKEMDVSVVRGAGDASNKXXEDGXNNIFETNLEAGHVLVDSQTHREAVLSKHLVDPCTSLDVGDIKSPKKKKKKKEKEAKSSCNGRSIKLDNVINEMKMEDMTQVIVAGGKQEQHVDDKETETTXKILPSSQVDHGLGEKPKKKKKERSKEGMVSIATDGYHISPVNLPLRNGQHTVNEMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVCVERSGETEMMEEDRSKGEDAKPSNVRTLKNGLVIQEQEKGKKDGKIAASGKKISIYYTGKLKENGAVFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPNSWLVYDIELVKVH* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1645 584 Gene3D Nucleoplasmin core domain 1 99 - -
Vra1g1645 584 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 492 581 IPR001179 GO:0003755
Vra1g1645 584 PANTHER PEPTIDYLPROLYL ISOMERASE 1 251 - -
Vra1g1645 584 PANTHER PEPTIDYLPROLYL ISOMERASE 399 584 - -
Vra1g1645 584 MobiDBLite consensus disorder prediction 109 138 - -
Vra1g1645 584 MobiDBLite consensus disorder prediction 109 163 - -
Vra1g1645 584 SUPERFAMILY FKBP-like 444 583 - -
Vra1g1645 584 MobiDBLite consensus disorder prediction 360 374 - -
Vra1g1645 584 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 399 584 - -
Vra1g1645 584 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 251 - -
Vra1g1645 584 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Vra1g1645 584 Gene3D - 445 584 IPR046357 GO:0003755
Vra1g1645 584 MobiDBLite consensus disorder prediction 343 374 - -
Vra1g1645 584 MobiDBLite consensus disorder prediction 283 308 - -
Vra1g1645 584 MobiDBLite consensus disorder prediction 405 437 - -
Vra1g1645 584 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 496 584 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1645 Vra-Chr1 29493592 29505837 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1645 495 581 Calmodulin-binding Proteins AT5G48570 43.182 8.24e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1645 K14826 - gmx:100798135 736.873