Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra1g1643 | ATGGGTCTAGAGTCTCATCTCATGGTATTGGTATTGTTCATATTTTTCCATCCATATCCATTGATCATGTACTTTATGTCCCTGGGTCTCCTTTTAACTTATTGTCTGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAAGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATGTGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACCTTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCAGGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTGTCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATCGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTAACGTCTGAGAGTGATGGACACTCTGACAAAATACCACCAAATTCATGGTTGGTTTATGACATTGAACTAGTTAAAGTTCATTGA | 654 | 0.393 | MGLESHLMVLVLFIFFHPYPLIMYFMSLGLLLTYCLMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVCVERSGETEMMEEDRSKGEDAKPSNVRTLKNGLVIQEQEKGKKDGKIAASGKKISIYYTGKLKENGAVFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPNSWLVYDIELVKVH* | 218 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra1g1643 | 217 | Gene3D | - | 79 | 217 | IPR046357 | GO:0003755 | |
| Vra1g1643 | 217 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 37 | 217 | - | - | |
| Vra1g1643 | 217 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 129 | 217 | IPR001179 | GO:0003755 | |
| Vra1g1643 | 217 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 37 | 217 | - | - | |
| Vra1g1643 | 217 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 125 | 214 | IPR001179 | GO:0003755 | |
| Vra1g1643 | 217 | SUPERFAMILY | FKBP-like | 56 | 216 | - | - | |
| Vra1g1643 | 217 | MobiDBLite | consensus disorder prediction | 47 | 69 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra1g1643 | Vra-Chr1 | 29401490 | 29407703 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra1g1643 | 128 | 214 | Calmodulin-binding Proteins | AT5G48570 | 43.182 | 3.63e-17 | 77.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra1g1643 | K14826 | - | vra:106777685 | 345.895 |