Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1636 ATGGAGGCCAGGGTCTCTTCCTCTCTGGGCCTCCCTTCTCCGAATCCTCACGAGATCTCAATCTCCACAACCCTCTCTGACTTCCCCTCCCTCCTCACCCATTTCCCCCCTTTCGCCTCCACCACCTCCGTCAAATGGCCCCGGCCCAACCCTAAACCCCAGCCCCTCAAATCCCTCCCCCTCCTTGATCGCGCCTTAATCGGCGCCGCCGCAGGAGGCCTCGCTGGTGCCTTTACCTACGTCTGCCTCCTTCCCCTCGACACCATCAAAACCAAGATGCAGACCAAAGGTGCTGCACAAATTTACAAAAACGCCCTCGACGCAGTCGTGAAAACGTTCCAGTCCAGTGGCCTCCTCGGCTTCTACAGCGGCATCTCCGCCGTCATAGTCGGCTCAACCGCCTCATCAGCCGTCTACTTCGGCACCTGCGAGTTCGGCAAATCGTTCCTTGGCAAACTCGAAAATTTCCCTGCCGTACTGATCCCTCCCACCGCAGGCGCCATGGGGAACGTCGCCTCGTCGGCGATCATGGTACCCAAGGAGCTCATCACGCAGCGAATGCAAGCTGGCGCCAAGGGACGCTCCTGGCAAGTCCTTGTGGAAATCCTCCAAAACGACGGTGTTATGGGCCTCTACGCTGGATACTCCGCGACATTGCTCCGAAACCTACCCGCAGGGGTTCTGAGTTATTCCTCCTTTGAGTATCTGAAAGCTGCGGTGCTTCAGAAAACGGAGAAGAACAATTTGGAACCGGTTCAGAGCGTTCTGTGTGGGGCACTCGCGGGGGCGATTTCAGCGTCCCTTACAACACCGTTGGACGTGGTGAAGACACGGTTAATGACGCAGGTTCGCGGCGAGGGGGTGAATAAGGTTGCGGCGGTTATGTACGACGGCGTTTCGTCGACGGTGAAGCAAATTTTGAAGGAGGAAGGGTGGGTGGGGCTGACTCGTGGCATGGGACCTAGGGTGCTTCACAGTGCGTGCTTTTCCGCGTTGGGTTACTTCGCTTTTGAGACGGCGAGGCTTGGGATTTTGCGGGAGTATCTTAGGAGGAAGGAATTGAGGGAAAGGGAAACTCAAGTTTCTGTTTCCACTGCCTGA 1101 0.5704 MEARVSSSLGLPSPNPHEISISTTLSDFPSLLTHFPPFASTTSVKWPRPNPKPQPLKSLPLLDRALIGAAAGGLAGAFTYVCLLPLDTIKTKMQTKGAAQIYKNALDAVVKTFQSSGLLGFYSGISAVIVGSTASSAVYFGTCEFGKSFLGKLENFPAVLIPPTAGAMGNVASSAIMVPKELITQRMQAGAKGRSWQVLVEILQNDGVMGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLQKTEKNNLEPVQSVLCGALAGAISASLTTPLDVVKTRLMTQVRGEGVNKVAAVMYDGVSSTVKQILKEEGWVGLTRGMGPRVLHSACFSALGYFAFETARLGILREYLRRKELRERETQVSVSTA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1636 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 343 IPR018108 -
Vra1g1636 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 63 149 IPR018108 -
Vra1g1636 366 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 35 358 - -
Vra1g1636 366 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 35 358 - -
Vra1g1636 366 SUPERFAMILY Mitochondrial carrier 66 338 IPR023395 -
Vra1g1636 366 Gene3D Mitochondrial carrier domain 193 365 IPR023395 -
Vra1g1636 366 Gene3D Mitochondrial carrier domain 21 192 IPR023395 -
Vra1g1636 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 157 239 IPR018108 -
Vra1g1636 366 Pfam Mitochondrial carrier protein 164 242 IPR018108 -
Vra1g1636 366 Pfam Mitochondrial carrier protein 249 341 IPR018108 -
Vra1g1636 366 Pfam Mitochondrial carrier protein 69 152 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1636 Vra-Chr1 29321351 29322856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1636 157 349 Chloroplast and Mitochondria Gene Families AT2G30160 27.230 1.54e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1636 K15111 - gmx:100805903 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1636 1 29321351 29322856 Vra1g1636 1 29321351 29322856 ECH