Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1619 ATGGATAGAATGTTCCCTCCCAAGAAGCCTTCTACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCAGGCCTTGTTCTCACCACAGACCCTAAACCACGTCTTCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGACAAGGCCACTCCTAAGACAATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTATCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAACAGCCCCACAAGGATTTCAATGAACAGTCTATCAAGGATGGCATGAGAGCTTCTGCTTTAGAACTTCAACGAAATATTGGCTCCTCTTCTGCCATGATTGGTCGCAACATGAACGAGATGCAAATGGAAGTGCAGAGAAGACTGCACGAACAACTAGAGGTTCAGAAAAACCTTCAGCTGAGGATTGAGGCACAAGGAAAATACATGCAAAGTATATTGGAGAAGGCTTATCACACACTTGCTCGTGAAAACATGGGCACTGGCATGAAGGGTGTGGCATCAGCAGGTCAAGGAAGCACTGAGATGGGTGTGATGAAAGAATTCTGTTCTCTGAATTACCCTTCTTTTCAAGATCTGAACTTGTACGGTAGTGGTGGTGGTGGTGGTGGTGGTGAACAACTTGAAGGGTTTATGGCATCGAACAGTGAGAGTGTGTTTGAGGGAAAGAAGAGAGTTTGCCCATACAGTGGAAGTGGGAAGAGTCCATTGATATGGAATGATGATCTCAGGCTTCAAGATTTGGGAACAGCTTCATCATGCATTAGCCCTGAAGAGGACCCTTTCAAAGGGGATCACAAGGTTCAGGTTTCACCACCATCAATGGATAGTGACCCCATGTCAGAGATCTATGACACAAAGCCATTGTTGCTGCATGGAGAAAGTGTATGTGTAGGTACCAATCACAAGAAATTTGAAGCTTCTATGAAGCTAGAAAGGCCTTCACCACAAAGATCACCCCTTCAACCAGAAAGGAATAGTCCTATGATCAATGCCACTTCCATGGCACAAGGGTTTTGA 1071 0.4547 MDRMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEQSIKDGMRASALELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLARENMGTGMKGVASAGQGSTEMGVMKEFCSLNYPSFQDLNLYGSGGGGGGGEQLEGFMASNSESVFEGKKRVCPYSGSGKSPLIWNDDLRLQDLGTASSCISPEEDPFKGDHKVQVSPPSMDSDPMSEIYDTKPLLLHGESVCVGTNHKKFEASMKLERPSPQRSPLQPERNSPMINATSMAQGF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1619 356 MobiDBLite consensus disorder prediction 336 356 - -
Vra1g1619 356 Gene3D - 34 92 - -
Vra1g1619 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 306 IPR044848 GO:0003700
Vra1g1619 356 MobiDBLite consensus disorder prediction 1 20 - -
Vra1g1619 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Vra1g1619 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 306 - -
Vra1g1619 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Vra1g1619 356 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Vra1g1619 356 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Vra1g1619 356 MobiDBLite consensus disorder prediction 271 296 - -
Vra1g1619 356 MobiDBLite consensus disorder prediction 324 356 - -
Vra1g1619 356 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1619 Vra-Chr1 28617404 28621205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1619 4 343 G2-like Transcription Factor Family AT1G79430 55.890 1.67e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra1g1619 Myb_DNA-binding 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1619 - - gmx:100796268 588.571