Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1610 ATGGTTTCTCTCACGGAAAAATCCAGAGTGGGCTCAACTCGAGCCTCTGTGGTCGCTGCTGCCGCCCAATCTCGCCCAAGCGTGGGTGGTAGGAAATTCAAGGTATTTTCGGAAATTGACCGGACTAAAGCTGGTGATGGGAATACGACTTCTGCCAGAGGAACAGTTGCAAATTCAAGAAGGAGTACCGTGGTGGCTGGCAAAGGGAATATTCTTACCAGTACCAGTAATCAAAAGGGTGGTCTCAAACAGAGTATGGATAAAAGTAGTGGCAAATATGGTACTTCTGTGAGAAAGGCATTGGCTGATGTTAGCAATGTTGAAGAAAAGTTAACAGCAGCTGTTGGGCATGCTAACTCAAAAATGAAGGTTTTAACAGGTTCAAGTACAAAAATAGTGGGTGTATCTTTGAGGAAGTCCATAACGGGAAGAGTGCAAAGAAATAATAGTAAAGCTGATGTTCGGTTAGATGCTCTCAATAAAGATGATCAGAAGAATAATACAAAAGGAGGCCAATCAATTTTCTCCACAAAGGACAGGTTTACATGGAAGACTACAGCTACGAGCACTACAAGGAAGTCTTTACCAGTACCAAGGAGGGTAATCAGAGAAGATACGAGTATAACAAAGGAAAATGTTAGTTCTCAAACAGCAAAAGGCCAAAGTTGTCTTCCCTCTAAGGCAACAACAAATAGAAGAGATAGCTCCCAACTGGTTAATGCAAGAAGCCATCTATGGAAGAATCGAGTGAGTGATGGTTTTGTTCTGACGGTTCAGCCTAATGTTTCACATGCATCCTTAAGGAAGCCTGCCAAGCCAGTCGTTAAGACCACACTGAAGGCTTCCATTGCGCAAAGGACTTCAAAATCTAAATCCATATCAGCTCAGAGTAAATTAGAATCAACTATTGCAACGTCATCTCAGAACAAATCCATATCAGCTCAGAACAAATTAGAATCGACTAGTGCAACCTTATCTCAGGAAAAAGAAACAGTTTCTTTGTCTCTTCCTGGGAATGGCTCGACAGTTTCTGATGATGCAAATCAAAGACATCTTCCGTCTGAGAGCACACTAAGAACTGATCTGTCAGAGATTATTCCAAGGAAAAAATCCAGCCGCCGAAAATCATATACAAGTTCATTAATTGAAGGATCTAAGTTTCTCAAGGAAAGTGAAGTTAGAGAGCAAGATAACCTACCCAATATAGATAATGAAAGCAATCAATTTGAAGTTTCTGAATACGTTGATGACATATATCAGTACTATTGGGTTACTGAGGCACGTAATCCAGCTCTAGCAAATTACATGTCAATTCAGACTGACATTACACCACATTTGCGGGGCATTTTGATCAACTGGCTAATTGAAGTACACTTCAAATTTGATTTGATGCCAGAAACACTGTATCTCACTGTTACGTTGCTGGATCAATATCTCTCCCTGGTGACTATCAAAAAGACTGATATGCAGTTAGTTGGCCTTACAGCACTTTTGCTGGCTTCAAAGTATGAGGATTTTTGGCATCCTAGGGTCAAAGATTTAATTAGCATCTCTGCTGGGTATACTAGAGATGAAATGCTTGGAATGGAAAAACTTATTCTTAGAAAATTAAAGTTCCGTCTCAATGCTCCTACTCATTATGTTTTTTTGGTGCGGTTTCTGAAGGCTGGACAATCAAATAAAAAGATTGAACACATGGCATTCTTTCTGGTTGACTTATGCTTAGTTGAATATGACGCTTTAGCATTCAAGCCTTCATTACTTAGTGCATCAGCTCTCTACGTTGCACGGTGTACTTTGCAAATATCTCCACCATGGACCCCATTACTTCACAAGCATGCGCGTTATGAAGTTTCACAGCTCAGGGATTGTGCGGAAATGATACTCAAGTTCCACAAAGCTGCTGGGGTTGGAAAGTTGACAGTTGCATACGAAAAGTACTCTAGACCAGAACTCGGTAAGGTTGCAGCAGTGAAACCTTTGGACGTACTTCCCCTGTGA 2001 0.4098 MVSLTEKSRVGSTRASVVAAAAQSRPSVGGRKFKVFSEIDRTKAGDGNTTSARGTVANSRRSTVVAGKGNILTSTSNQKGGLKQSMDKSSGKYGTSVRKALADVSNVEEKLTAAVGHANSKMKVLTGSSTKIVGVSLRKSITGRVQRNNSKADVRLDALNKDDQKNNTKGGQSIFSTKDRFTWKTTATSTTRKSLPVPRRVIREDTSITKENVSSQTAKGQSCLPSKATTNRRDSSQLVNARSHLWKNRVSDGFVLTVQPNVSHASLRKPAKPVVKTTLKASIAQRTSKSKSISAQSKLESTIATSSQNKSISAQNKLESTSATLSQEKETVSLSLPGNGSTVSDDANQRHLPSESTLRTDLSEIIPRKKSSRRKSYTSSLIEGSKFLKESEVREQDNLPNIDNESNQFEVSEYVDDIYQYYWVTEARNPALANYMSIQTDITPHLRGILINWLIEVHFKFDLMPETLYLTVTLLDQYLSLVTIKKTDMQLVGLTALLLASKYEDFWHPRVKDLISISAGYTRDEMLGMEKLILRKLKFRLNAPTHYVFLVRFLKAGQSNKKIEHMAFFLVDLCLVEYDALAFKPSLLSASALYVARCTLQISPPWTPLLHKHARYEVSQLRDCAEMILKFHKAAGVGKLTVAYEKYSRPELGKVAAVKPLDVLPL* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1610 666 CDD CYCLIN 542 629 IPR013763 -
Vra1g1610 666 MobiDBLite consensus disorder prediction 207 234 - -
Vra1g1610 666 MobiDBLite consensus disorder prediction 287 361 - -
Vra1g1610 666 Pfam Cyclin, C-terminal domain 544 659 IPR004367 -
Vra1g1610 666 SUPERFAMILY Cyclin-like 406 542 IPR036915 -
Vra1g1610 666 PANTHER CYCLINS 133 663 IPR039361 -
Vra1g1610 666 PANTHER CYCLIN-B3-1-RELATED 133 663 - -
Vra1g1610 666 Gene3D - 537 664 - -
Vra1g1610 666 SUPERFAMILY Cyclin-like 544 663 IPR036915 -
Vra1g1610 666 SMART Cyclin_C_2 544 661 IPR004367 -
Vra1g1610 666 Pfam Cyclin, N-terminal domain 417 542 IPR006671 -
Vra1g1610 666 CDD CYCLIN 446 534 IPR013763 -
Vra1g1610 666 MobiDBLite consensus disorder prediction 208 234 - -
Vra1g1610 666 Gene3D - 432 536 - -
Vra1g1610 666 SMART cyclin_7 452 535 IPR013763 -
Vra1g1610 666 SMART cyclin_7 548 630 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1610 Vra-Chr1 28359452 28369510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1610 28 666 Core Cell Cycle Gene Families AT1G16330 44.495 3.75e-165 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1610 K21777 - gmx:100808850 925.235