Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1604 ATGGCAATGCAGTGGTCAATTGTAGATGATGGCTTTATTATCGAATTTGCAATTCTTGGCCACCACAATAACAACAACCGTGGAAATATAAGATCTGGTGAAGAAGATGTTGAAGTTTATGTCCTTGATTCTGTGAACTTAGGTGGCAGCAACATTCAAAACAATGGCAGTAGAAGTTTAAGATCAAGCGAAGATGGTATTTTGATTTTTGATTCTGTGCAGTACAACTATGATTCTTTGAAAAATCTTGAAAGGTTTATAATTGAAGAAAAAACAGAAGATTCTTGTTGCATATGTCTTGAGGAATTTGCAATCGGATCAAGTGCAATTCGCATACCCCATACATGTTCTCATATCTTTCATCACCACTGCATCACAGAATGGCTCGACATCAATCACACTTGTCCTTTGTGTCGTAGAAACATATAA 429 0.3636 MAMQWSIVDDGFIIEFAILGHHNNNNRGNIRSGEEDVEVYVLDSVNLGGSNIQNNGSRSLRSSEDGILIFDSVQYNYDSLKNLERFIIEEKTEDSCCICLEEFAIGSSAIRIPHTCSHIFHHHCITEWLDINHTCPLCRRNI* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1604 142 Pfam Ring finger domain 94 139 IPR001841 -
Vra1g1604 142 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 78 139 - -
Vra1g1604 142 SMART ring_2 96 138 IPR001841 -
Vra1g1604 142 SUPERFAMILY RING/U-box 88 142 - -
Vra1g1604 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 139 - -
Vra1g1604 142 ProSiteProfiles Zinc finger RING-type profile. 96 139 IPR001841 -
Vra1g1604 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1604 Vra-Chr1 28117242 28117670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1604 68 142 C3H Transcription Factor Family AT1G74620 42.105 1.36e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1604 - K22378 pvu:PHAVU_007G097900g 125.946