Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1572 ATGCAGCTAGGAGACTCAAGTGTGTTGGAGATCTCCTCCCATAGCGAGCCCGAGATGGCGGTGGCCGCGGCGACGGAAGGAGCGGCTCACGGCGGCGAGGATGACGGTGGTGATGATGAGATGATTGGGGTGGATGTGGATGCAAATTCAGGTGAAGGAAATGAAGGTAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCAGTTTTTCGTGATTCAAGTCTTAAAGGTCCACTATGGGAAGAAGTTTCAAGGAAACTGGAGGGGCTTGGATATCATCGAAGTGCAAAGAAATGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAAAACAAAAGTGGGAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAAAATCATCATTTCACGATCTCTTACCCAACAAAGCCACAACCTACTTTGGCAACAACAAACACATTGACGTTGCCAGCTAGACAAAGTGATCATGGTAACAACAATGTTATCTCTTATGTCACACCTTTTCCTTCCACAAACCCTACACACATTTCTCCTTCACCACAAACCAATACCGATACCAACACAAACACCACCATAGTATCCACAACCAACCCTAGAGACACATCACCACCACAAACCACCACCAACAACACCAACAACGACAATGTCACGTATTCTTTGCCAAACATGAACACCCCTTTCTCAACCACCACCACCACTTCCACCTCTTCTTCCACAGCATCTGATGAAGACTTGGAAGAGAGGTACCGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTCTTGAAGCAAGAGGAAATGCAGAAGAAGTTCTTGGAAGCCATGGACAAAAGGGAGAGGGAAAGAGTGTCACAACAAGACAATTGGAGGATCCAAGAGATGGCAAGGATTAACAGGGAACATGAGATTCTTGTTCAGGAGAGATCAACAGCAGCAGCCAAAGATGCTGCAGTCATTGCATTATTGCAGAAGATGTACGGCCAGCAAAACACCACACAACATGTTCAAGTACAACCACCAGAACAACAGAATCAAACAACGCTACAATCACAGCCTCCAACACCAATGCCAAACAATAATTTTGAGGTCAAGAAATTGAATAATGGTCATCACAGTGCTACCAGTACTAGCACTGTCACTACTTCTCCCGCGACTTCTTCTTCTTCTAGATGGCCAAAGGCTGAAGTTCATGCTTTGATAAGGTTGAGGACAAGTCTTGATACCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCGATCGCAATGCAGAGGCTTGGTTACAACCGGAGTGCAAAGAGATGCAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAAAAAAATGAGGGAGAATAACAAAGAAAGGCGTGAAAATAGCAAAACATGTCCTTATTTTCACGAGCTTGATGCTATATACAAGGAAAAGAGCTTATCCCAGAATCCCTTTGGCGTGTTCCAGAACATGAAGCCAAACGAGATGATGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGGCCTCCACCCCAATCGTTGGAAGAGGGTATAGAGAAGAACTCTAGCGATGAATATCAAGAAAAAGAAGAAGAAAACGATGGTGATGATGATGATCACGTTGCTGTTGAAGAAGATGAAGATGGTGTGGAAGATGAAGGGTGTGAGACTGGGACAAATGATTAA 1797 0.4452 MQLGDSSVLEISSHSEPEMAVAAATEGAAHGGEDDGGDDEMIGVDVDANSGEGNEGNKMSFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLEGLGYHRSAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENHHFTISYPTKPQPTLATTNTLTLPARQSDHGNNNVISYVTPFPSTNPTHISPSPQTNTDTNTNTTIVSTTNPRDTSPPQTTTNNTNNDNVTYSLPNMNTPFSTTTTTSTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDKRERERVSQQDNWRIQEMARINREHEILVQERSTAAAKDAAVIALLQKMYGQQNTTQHVQVQPPEQQNQTTLQSQPPTPMPNNNFEVKKLNNGHHSATSTSTVTTSPATSSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRENNKERRENSKTCPYFHELDAIYKEKSLSQNPFGVFQNMKPNEMMMMEPLMVQPEQQWRPPPQSLEEGIEKNSSDEYQEKEEENDGDDDDHVAVEEDEDGVEDEGCETGTND* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1572 598 CDD GT1 64 129 - -
Vra1g1572 598 ProSiteProfiles Myb-like domain profile. 421 479 IPR001005 -
Vra1g1572 598 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 1 593 - -
Vra1g1572 598 MobiDBLite consensus disorder prediction 565 592 - -
Vra1g1572 598 Gene3D - 423 484 - -
Vra1g1572 598 Gene3D - 66 127 - -
Vra1g1572 598 MobiDBLite consensus disorder prediction 363 423 - -
Vra1g1572 598 CDD GT1 422 486 - -
Vra1g1572 598 MobiDBLite consensus disorder prediction 199 274 - -
Vra1g1572 598 MobiDBLite consensus disorder prediction 540 598 - -
Vra1g1572 598 MobiDBLite consensus disorder prediction 1 64 - -
Vra1g1572 598 PANTHER - 1 593 - -
Vra1g1572 598 Pfam Myb/SANT-like DNA-binding domain 64 150 IPR044822 -
Vra1g1572 598 Pfam Myb/SANT-like DNA-binding domain 421 508 IPR044822 -
Vra1g1572 598 SMART sant 419 481 IPR001005 -
Vra1g1572 598 SMART sant 62 124 IPR001005 -
Vra1g1572 598 MobiDBLite consensus disorder prediction 199 266 - -
Vra1g1572 598 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1572 Vra-Chr1 26464348 26467593 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1572 61 544 Trihelix Transcription Factor Family AT1G76880 49.231 1.08e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra1g1572 Myb_DNA-bind_4 3.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1572 - - gmx:100807507 845.114