Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1570 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGTGGAGGAGGAGGGTCTGGAGATGCAGTGGTGGCAGCAGGAGGGGGTGCTGTTCATGACGGTGCTGTTGACGTGGCAGGCGGTGGTGGCGGCGGTGGTGGAGGAGGATCAAATTCAGGGGATGATGAGAGGGGGAGAGTGGAGGAAGGTGACAGGAGCTTTGGTGGTAACAGATGGCCGAGACAAGAGACTCTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGGCTTTCAGAGATGCAAGTGTGAAGGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTGGCAGATCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGCCGCAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATCCTATCCAATCTCCACCACCACCACCAGTAACAACAACAACAGCACTACCCGCAACACCAGTGTCAATAGTCGTAACAACCACACCCTCTTCAATAATGTCTCTTCCCCCGACCACATCGTTGCCATTGCCACCTGTGTCTAACAACACCACTGTTCCATCCCCAACAACACTCCCTGTGCCTCAATCCATTCTCGCCCTCACAACCTCTTCCTTCCCATCATCAAACCCTACACCATACTTCCCAACACAAACACCAAACCCTACACCCAACAACACCAACACCAAGAACCCTCTAAACACCATCGCCCCACCTTCCTTCCCCAACATTCCGACTGATCTCTTGTCCAATTCCAGCTCTTCCTCCACCTCTTCGGAGGAAACAACCACGGAGGGAGGGGGAGCGAGACGCAAGAGAAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTTATAGAGAAACAGGAGGAGCTGCAAAGGAGGTTCCTGGAGGCCATTGAGAAGAGAGAACAAGAGCGTGTCGCGAGAGAAGAAGCGTGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTTGCACAGGAGAGATCCATTGCTGCCGCTAAAGACGCTGCTGTTATGGCATTTTTGCAGAAGATGGCAGAACATCAGCAAGAGGAAAATAATCTTCAACCAGCATTGAATACCAACAACAACATCATCGCTATTACTCCACAGCAACCGATGCCACAAGCAACTCCAACACCAACACCACAGCAAAAACAAACAACAACTGTTCCCGAGGCCCCACCAGTGCAGTCCTTGGTCCCACAGCCACAGCAACATCAGGTGCAGCAACAACAACAACTAGTGATGACTAATGTGGAAACCAATAAAGCTGCTAATAACGGTGAGAATTTGATGATGGGAGCGAGTTCTTCGCGGTGGCCAAAAGTGGAGGTACAAGCGCTGATAGATCTGAGAACAAACCTGGAAACAAAGTACCAGGAAAATGGACCAAAAGGCCCTCTGTGGGAGGAGATCTCAGCTTTGATGAGAAAAATGGGGTACAACCGGAACGCGAAAAGATGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGCAACAAGAAGAGGCCCGAAGATTCCAAGACCTGTCCCTATTTTCACCAGTTGGAGGCTTTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCATGATGGCACCCCTCATGGTGCAGCCGGAGCAACAGTGGCCTCCTCAGCAGGTGGTGCCCCCAGAAGTAACCATGGAAGACGCCCAGAATGACCCCATGGACGGGGGGCACCAGGAGGATGGTGAGGAGGAGGAGGAAGAGGACAAGGAGATTGGAGATGAAGATGATGAAGAAGACGATGAAGGTGGTAACTATGAGATAGTAGCAAGCAAGCCAGCTTCAGCTGGTGATGCTTCTGCGGAGTGA 1971 0.5043 MLGDSAVLGTGGGGGSGDAVVAAGGGAVHDGAVDVAGGGGGGGGGGSNSGDDERGRVEEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIHPIQSPPPPPVTTTTALPATPVSIVVTTTPSSIMSLPPTTSLPLPPVSNNTTVPSPTTLPVPQSILALTTSSFPSSNPTPYFPTQTPNPTPNNTNTKNPLNTIAPPSFPNIPTDLLSNSSSSSTSSEETTTEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVAREEAWRMQEMQRINREREILAQERSIAAAKDAAVMAFLQKMAEHQQEENNLQPALNTNNNIIAITPQQPMPQATPTPTPQQKQTTTVPEAPPVQSLVPQPQQHQVQQQQQLVMTNVETNKAANNGENLMMGASSSRWPKVEVQALIDLRTNLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKVEGQMKPESMMAPLMVQPEQQWPPQQVVPPEVTMEDAQNDPMDGGHQEDGEEEEEEDKEIGDEDDEEDDEGGNYEIVASKPASAGDASAE* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1570 656 MobiDBLite consensus disorder prediction 231 300 - -
Vra1g1570 656 ProSiteProfiles Myb-like domain profile. 473 531 IPR001005 -
Vra1g1570 656 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 646 - -
Vra1g1570 656 Gene3D - 69 130 - -
Vra1g1570 656 Gene3D - 475 536 - -
Vra1g1570 656 MobiDBLite consensus disorder prediction 612 638 - -
Vra1g1570 656 Coils Coil 304 335 - -
Vra1g1570 656 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Vra1g1570 656 Pfam Myb/SANT-like DNA-binding domain 473 560 IPR044822 -
Vra1g1570 656 ProSiteProfiles Myb-like domain profile. 67 125 IPR001005 -
Vra1g1570 656 MobiDBLite consensus disorder prediction 587 656 - -
Vra1g1570 656 MobiDBLite consensus disorder prediction 406 428 - -
Vra1g1570 656 MobiDBLite consensus disorder prediction 1 68 - -
Vra1g1570 656 SMART sant 65 127 IPR001005 -
Vra1g1570 656 SMART sant 471 533 IPR001005 -
Vra1g1570 656 MobiDBLite consensus disorder prediction 247 290 - -
Vra1g1570 656 CDD GT1 473 538 - -
Vra1g1570 656 CDD GT1 67 132 - -
Vra1g1570 656 PANTHER - 1 646 - -
Vra1g1570 656 MobiDBLite consensus disorder prediction 51 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1570 Vra-Chr1 26308418 26312113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1570 65 587 Trihelix Transcription Factor Family AT1G76890 47.786 8.11e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra1g1570 Myb_DNA-bind_4 4.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1570 - - gmx:100804788 734.176