Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1546 ATGGACCCCAAGTTCACCGGAAAGTCGCCGCTGACGCTGGACCTTGAACGCATGCCCGAGCGTGGGTCCCACCACCGCCGCTCCCACTCCGACACGTCCTTCCGCTTCGCCGCGAACTTCGACGACCTACTCCTCTTCGACGCCTCCGACCTCGACATCTCCACGCTCCCCTCGCCGCTCCCCCTGCCTTCGCCGGGGGCCTCCGGGGCGGTGCCGATAGCAGTAGATTCCGACGAGTCCGGCGGAAGGCCGAGGCCGGCGGGGGCACCCGCCGGCGGGCACCTGAGGAGTCTGTCGGTGGGCTCCGATTTCTTTGACGGGATCGGGTTCGGCGGCGGCGAGGAGAGGGGCGGCGGAGGGAGGGTCGGCGGCGAGCGGAGGGTAGGGCACCATCGGCACAGCAACTCCATGGACGGGTCCTCGACGACGTCGTTTGAGGCGGACTCGGCGATGAGGATAGATGGCGTGAAGAAAGCTATGGCTCCTGATAAACTAGCTGAACTCGCTCTTATTGATCCCAAAAGAGCTAAGAGGATTCTTGCTAACAGGCAATCTGCTGCTAGATCAAAGGAGAGGAAGATTCGTTACACCAGTGAATTGGAGAGGAAGGTGCAGACACTTCAGACTGAAGCAACCAACCTATCTGCACAGCTTACCATGCTTCAGAGAGACACCACAGATTTAACTGCAGAGAATAAGGAACTCAAACTGCGTCTAGAGGCTTTAGAGCAAGAAGCACAGCTTAGAGAAGATCTGAATGAGGCATTGAAAGAAGAACTGCAGCGCCTTAGGGCACAGAGTACTCGTTTGGGTGCTATTGCAGGTAACCCTTCTTTTGGTGGGATATTCAACCAGTTGGCTTCCCAGTTAGCGATGCAACAGTTGAGTAATTCTGCACCACAGCAAGCACAACACCAGGCACAGGTTGGCATGCCTCCTCCTCCCTCTGGACAGAACCACCCTAACTTCATGGATTTCAATCAGCAGAAGTAG 993 0.573 MDPKFTGKSPLTLDLERMPERGSHHRRSHSDTSFRFAANFDDLLLFDASDLDISTLPSPLPLPSPGASGAVPIAVDSDESGGRPRPAGAPAGGHLRSLSVGSDFFDGIGFGGGEERGGGGRVGGERRVGHHRHSNSMDGSSTTSFEADSAMRIDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEALEQEAQLREDLNEALKEELQRLRAQSTRLGAIAGNPSFGGIFNQLASQLAMQQLSNSAPQQAQHQAQVGMPPPPSGQNHPNFMDFNQQK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1546 330 MobiDBLite consensus disorder prediction 294 313 - -
Vra1g1546 330 Coils Coil 197 273 - -
Vra1g1546 330 MobiDBLite consensus disorder prediction 294 330 - -
Vra1g1546 330 MobiDBLite consensus disorder prediction 14 31 - -
Vra1g1546 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 235 IPR004827 GO:0003700|GO:0006355
Vra1g1546 330 MobiDBLite consensus disorder prediction 109 144 - -
Vra1g1546 330 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 327 - -
Vra1g1546 330 Pfam bZIP transcription factor 174 232 IPR004827 GO:0003700|GO:0006355
Vra1g1546 330 MobiDBLite consensus disorder prediction 62 95 - -
Vra1g1546 330 CDD bZIP_plant_RF2 175 224 IPR044759 GO:0003700|GO:0006355
Vra1g1546 330 MobiDBLite consensus disorder prediction 1 31 - -
Vra1g1546 330 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 9 327 - -
Vra1g1546 330 MobiDBLite consensus disorder prediction 119 134 - -
Vra1g1546 330 SUPERFAMILY Leucine zipper domain 174 226 IPR046347 GO:0003700|GO:0006355
Vra1g1546 330 Gene3D - 173 245 - -
Vra1g1546 330 SMART brlzneu 170 234 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1546 Vra-Chr1 25617463 25621921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1546 14 329 bZIP Transcription Factor Family AT1G43700 47.953 4.17e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra1g1546 bZIP_1 7.5e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1546 K20557 - gmx:778142 454.521