Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1542 ATGGAAGTGAAAGCTGAGATTGTATCTAAGGAAACTATAAAGCCATCTTCTCCAACATCCAATAAGTTTTTCAAACTCTCTCTCCTCGATCAATTGGCTCCTCCATTTTACGTTCCTATTCTCCTCTTTTACTCTGCTTCCGATGCCACACACAACAAACCAGTATCTCATAAATTAAAGGCTTCTTTATCACAAGTCCTCACTCTCTATTACCCCTTCTGCGGAACCCTCAGAGACAACTCAACCGTTGAGTGCAACGATGAGGGCGTTGTTTTCACCGACTGTACAGTCCCCATGGAACTCTCAAGCCTTCTTAAAAACCCTGACCTTCACCATATCAACCACCTTTTCCCATGCGATCCATACAACCCTGCAAGGGAAACTCTCACTGGGAACATGGCAGTTCAGTTCAACCACTTCACGTGTGGAGGTTTTGCTCTTGGCGTCTGCTTCTCACACAAAATCGCTGATGCTTCCACAGCAGCATCCTTCCTCACTGCTTGGGCTGCAACATCAAGAGGCAACAAACCGATACTACCACAAATGGAAGAAGGCGCACAGGTTTTTCCGCCGAGGAAGATAGAAATGGACTTGATTGGTGGCATGATGGGCCAAAAAAGCATTGCCACAAAGAGGTTTGTGTTCAACAGGACGAACATATCCAGACTGAAGCAAAAGCTGGGGAGCTTCGATTTCACTCCCACTAGTGTGGAAGCCGTGACAGCACTGATATGGAAATCATCACTGGAAGCGGCGAAAGCAAGTTCAGAGGAAGGAAAAATTCCGGCATCTATGGTATCCCACGCGGTGAATATTCGCAGCAGAATGGCCCAAACGCTGTCGGAGCATTCGACGGGAAATCTGTGGCAACAAGCAGTGTCTCCGGTGGTAGAGGTGGAAGGAGAAGTGAGGCTTGGTGATTTGTGCGAGAGAGTGAGGGAAACGATAAGAAAAATTGATGGAAATTATGTGAGTAAGCTTCAGGGTGATGAATTTTATAAGGTGATGGAGTCTTTGAAGGAAGCAAGAAGAATGGCCGCAGAAAAGGGTGTTCCATGTTTCAGCTTTAGCAGTTGGATGAGATTTGGGTTCTATGAAACGGATTTCGGATGTGGAAAACCAAGTTACGTGCGCACTATCGGAGTTCCTATAAAAAACGTGGTGATTTTGATGGGTACTAAGGTTGGTGATGGCATGGAGGCATGGATAACCTTGACTTCGCGTGACATGGTGCATTTTGAGCAAAATCCAGAACTTCTCAAGTTTCTTTCGTTTGATTCTTAA 1284 0.4572 MEVKAEIVSKETIKPSSPTSNKFFKLSLLDQLAPPFYVPILLFYSASDATHNKPVSHKLKASLSQVLTLYYPFCGTLRDNSTVECNDEGVVFTDCTVPMELSSLLKNPDLHHINHLFPCDPYNPARETLTGNMAVQFNHFTCGGFALGVCFSHKIADASTAASFLTAWAATSRGNKPILPQMEEGAQVFPPRKIEMDLIGGMMGQKSIATKRFVFNRTNISRLKQKLGSFDFTPTSVEAVTALIWKSSLEAAKASSEEGKIPASMVSHAVNIRSRMAQTLSEHSTGNLWQQAVSPVVEVEGEVRLGDLCERVRETIRKIDGNYVSKLQGDEFYKVMESLKEARRMAAEKGVPCFSFSSWMRFGFYETDFGCGKPSYVRTIGVPIKNVVILMGTKVGDGMEAWITLTSRDMVHFEQNPELLKFLSFDS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1542 427 Gene3D - 206 421 IPR023213 -
Vra1g1542 427 Pfam Transferase family 4 419 - -
Vra1g1542 427 Gene3D - 1 197 IPR023213 -
Vra1g1542 427 PANTHER N-BENZOYLTRANSFERASE PROTEIN, PUTATIVE-RELATED 3 426 - -
Vra1g1542 427 PANTHER F21J9.9 3 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1542 Vra-Chr1 25484342 25485932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1542 3 415 Monolignol Biosynthesis Gene Families AT5G48930 23.195 5.19e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1542 - K13065 vun:114165189 711.835