Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1533 ATGGCTAAGATAAGGGAGAAGTTATACGTCAGCGTTCCGAGTCTCTTTCGGTGCCCAATTTCAATGGACGTCATGCAGTCCCCTGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCGCTGGCTAGACTTAGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTTCACCGCCTCATCCGCCTGTGGCTCCTCTCCGCCGAACCTCCCTCGCCGGATTCCTCTGCCGACAGCCTGCACTCCCTCCTCCGCCAAATCCAAACCGCTGACGATGACCTCGCCGGAACCCTCTCCAAAATCGCCGAATTCGCCACAACCTCCGGCGAAAATCGTCGGAAACTTGCCTACTTCCCCGGCTTCGACGCCGCTATCGTACGCGCGCTGGCCAGGTGCAGTTCGCGGATAGACGCGTCTGAAAACGTGATTTACCTTCTCGACTCGGTCCTCCGAGAAAACGGAAATCCGGAGAAGATCCGAAGGCTAATTTTCGACGCTCGCCAACAATGCTTTGATTCGATGATTTTCATTTTACAAAACGGATCTTCGAAATCGAAGATTGAAACGGTTAGGTTTTTGGAGTTTCTTGCGTGCGATTTTCAGTCCTCAAAATCGATCGCCGAAACGCAAGGACTGTTGTCTTTGGTAGCGGGTTTTTTGAAGGACGGTGGAGAGGAGTTACGCGAGGCCGTTTTGTTGTTTCTAGGCGTCGTTTTGGTGACTCGCTCCGCGAAGGTGGAACTAGTTAATTGCGGTGTTGTCGAATTGGTTTCGAAATTGTTACGAGATTGTTCGTCGGCGAAGACGGCGGAGAGGTGTCTGAGGGTGCTGGCGGTGGTGGCGACGTGCGCGGAGGGGAGGGAGGCGATGGCAGCGGAGCCTTCGTGTGCAGCGGCGGTGGTGGAGAGAGTGACGAAGGCGGTGAAGGTGGCGGCGGAGGACGCAGTGGTGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGTAATGTGAAGGTGAGGGATGACGTGGCAAAGCGAAACGGCGTGGCAGTGATTTTATTGGTTATGCAGAGAGGGTGGGAGGAGCACGTGAGGAGCATGTGTGTGGATTTGATTAAGGTTTTGAAGGGTGCGTCCAAGAACAATGGGTTGGGGTTGGAACTGGGAACCTATGACACCAAAACCACTCATATCAAACCTTGTTAA 1224 0.5441 MAKIREKLYVSVPSLFRCPISMDVMQSPVSLCTGVTYDRASIQRWLDLGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAEPPSPDSSADSLHSLLRQIQTADDDLAGTLSKIAEFATTSGENRRKLAYFPGFDAAIVRALARCSSRIDASENVIYLLDSVLRENGNPEKIRRLIFDARQQCFDSMIFILQNGSSKSKIETVRFLEFLACDFQSSKSIAETQGLLSLVAGFLKDGGEELREAVLLFLGVVLVTRSAKVELVNCGVVELVSKLLRDCSSAKTAERCLRVLAVVATCAEGREAMAAEPSCAAAVVERVTKAVKVAAEDAVVVLWSLCCLSGNVKVRDDVAKRNGVAVILLVMQRGWEEHVRSMCVDLIKVLKGASKNNGLGLELGTYDTKTTHIKPC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1533 407 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 407 - -
Vra1g1533 407 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Vra1g1533 407 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Vra1g1533 407 PANTHER WDSAM1 PROTEIN 6 407 IPR045185 GO:0061630
Vra1g1533 407 Gene3D - 79 394 IPR011989 -
Vra1g1533 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 78 IPR013083 -
Vra1g1533 407 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Vra1g1533 407 SUPERFAMILY RING/U-box 8 81 - -
Vra1g1533 407 CDD RING-Ubox_PUB 16 58 IPR045210 -
Vra1g1533 407 SUPERFAMILY ARM repeat 180 381 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1533 Vra-Chr1 25267701 25269200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1533 6 406 U-box Gene Family AT5G09800 37.831 1.98e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1533 - - gmx:100786235 597.045