Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1532 ATGGCAGATCTTGCTAGCTACGGGAATGCCAACCGTGACATTGAACAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGCAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAGTGACGAATCATCTTTAATCTGGATTACAAGTAGCGGAGAAAGAAATTTGAAGTTATCTTCAGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGCTACTTGCGTCCTGAGAAGGACTATTTGTCCTTTTCACTTATTTATGGTAACGGAAAGCGGTCGCTTGATTTGATTTGTAAAGATAAAGCTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGGACTGATATCTTCTGGTCAAGGTGGCCGATCTAAAATTGATGGATGGAGTGACGGGGGTCTCATTCTTGATGATAACAGAGACTTAAAATCAAAAAGTCCAAGTGAAAGTTCTGCTAGCACTTCACGAGGCATCAGTTCTCCTGACATTTCTGTGAGTCTTCCAAATACTTCACCGAAGTCTTTTCAACCTGACAATATAATCTCTGAAAGGTCACATGCACCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCTAGTACTTCAAGTCATGGATCTGCACCAGACGACTATGATGCTCTGGGGGATGTATACATATGGGGCGAGGTTATCTGTGATCATGTTAAAATTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATTTACTTCTCCCTAGACCACTGGAAGCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAGACACGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATCTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCATGTGCTGTTACAATGGCTGGGGAACTATACACATGGGGTGATGGTACTCATAATGCGGGGCTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGCGAATTTCCAATTCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCTTGGCACACAGCGTTGATAACTTCAACAGGGCAGCTGTTTACATTTGGGGATGGAACATTTGGTGTCCTGGGCCATGGAAATAAGGAAAATGTTTCATATCCTAAAGAAGTGGAATCCTTGTCTGGACTGAGGACAATTGCTGTAGCATGTGGGGTGTGGCATACTGCAGCTGTTGTAGAAGTTATGGCAACACACTCCAGTACAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAGAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCGCTTATTGATTACAATTTTCATAAAATTGCTTGTGGACACAGTTTGACAGCAGGCCTGACGACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGGAAGCTTCCATGCTTGGTTGGAGACAAGATTGCTGGGGAATGTGTTGAAGAAATTGCATGTGGTGCGTATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATCGAAGATCGAAAAACACCAGCTTTGATTGAAGCATTGAAGGATAGACATGTGAAATATATAGCTTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGCTTTACAAGAAAGAGGCATAATTGTTATAACTGTGGATTGGTCCACTGTCATTCGTGCAGTTCAAGAAAAGCATTAAGAGCAGCATTGGCTCCTAATCCCGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGTAAAATTGATCAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGCCTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGACTAGACAAATCTGACCTGAGATTATCCAAGGCAATAATTCCTTCTAATGTGGATTTGATAAAGCAACTAGATAATAAGGCGGCCAAGCAAGGAAAGAAAAATGATACATTCTCTCTGGTACGCACATCACAACCACCTTCTTTGCTACAGCTGAAAGATGTTGTCATGTCCACTGCTCTTGATCTGAGACGAACGGTTCCAAGACCGGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCACCTTTTTCTAGAAGACCAAGCCCCCCTCGCTCAGCTACTCCAATTCCAACAACTTCAGGACTTTCCTTCTCGAAAAGTATTTCTGATAGTTTAAAGAAGACAAATGAACTTCTAAATCAAGAAGTGCAGAAGTTACATGCTCAGGTTGAGGGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACCGAAGAAGCTATGTTATTGGCTGCTGAGGAATCTGCCAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCGCTCACAGCACAGCTCAAAGATCTAGCGGAGAAGCTTCCTCCTGGAGTTTATGATACCGAGAACATAAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCAGATTCAAATGGGGAGCAGCAGCATTCAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTCTACTGAATAGAACTGCACGGAATTCACCAGGAACCAATGGAACTAATCTTCACCAGCAAATCCGGAGCCCTGTGATCTCTAATGGGACCAATAGTTATCCAGATGTTAAATTGCCAAACGGTGGTGGCGTAATTCAAGCAGGCAGCGGTAGCACAGCTGATGATGGTAGGGATTCTGGGAATTTTCACAATGACGAGAGTGGTCTGAAATCAAGGAATGCTGTACCTGCTGCTAATACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTTGTGGCACTTCGTGATGGAACGAGAGATCTGAAGCGAGTACGTTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAAACCTGGTGGTCGGAGAACCGGGACAAGGTATATGAAAGATACAATGTTCGCAGTGCAGACAAACCTGCCGGTCAGGCGGCACGAAGTTCGGAAGGGGCTGGTTCACCTGTTTCCCAAACTTAG 3354 0.4386 MADLASYGNANRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWITSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYGNGKRSLDLICKDKAEAEVWIAGLKGLISSGQGGRSKIDGWSDGGLILDDNRDLKSKSPSESSASTSRGISSPDISVSLPNTSPKSFQPDNIISERSHAPPDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDHVKIGADKNVNYFSPRADLLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRISNSLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGNKENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVMATHSSTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYVKLIKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDNKAAKQGKKNDTFSLVRTSQPPSLLQLKDVVMSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSISDSLKKTNELLNQEVQKLHAQVEGLRQRCELQELELQRSAKKTEEAMLLAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGLEPNGIHYPDSNGEQQHSAESISGSSLASMGLESSLLNRTARNSPGTNGTNLHQQIRSPVISNGTNSYPDVKLPNGGGVIQAGSGSTADDGRDSGNFHNDESGLKSRNAVPAANTNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKPAGQAARSSEGAGSPVSQT* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1532 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Vra1g1532 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Vra1g1532 1117 MobiDBLite consensus disorder prediction 145 206 - -
Vra1g1532 1117 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Vra1g1532 1117 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Vra1g1532 1117 Gene3D - 13 129 IPR011993 -
Vra1g1532 1117 Coils Coil 822 863 - -
Vra1g1532 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Vra1g1532 1117 Gene3D - 453 634 IPR009091 -
Vra1g1532 1117 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Vra1g1532 1117 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Vra1g1532 1117 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Vra1g1532 1117 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Vra1g1532 1117 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Vra1g1532 1117 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Vra1g1532 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Vra1g1532 1117 Coils Coil 871 898 - -
Vra1g1532 1117 CDD PH_PLC_plant-like 12 124 - -
Vra1g1532 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Vra1g1532 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 403 451 IPR000408 -
Vra1g1532 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Vra1g1532 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 348 399 IPR000408 -
Vra1g1532 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 465 512 IPR000408 -
Vra1g1532 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 517 566 IPR000408 -
Vra1g1532 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1098 - -
Vra1g1532 1117 MobiDBLite consensus disorder prediction 782 816 - -
Vra1g1532 1117 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Vra1g1532 1117 CDD FYVE_like_SF 631 684 - -
Vra1g1532 1117 SUPERFAMILY PH domain-like 13 123 - -
Vra1g1532 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Vra1g1532 1117 SMART fyve_4 620 689 IPR000306 GO:0046872
Vra1g1532 1117 SUPERFAMILY FYVE/PHD zinc finger 622 697 IPR011011 -
Vra1g1532 1117 MobiDBLite consensus disorder prediction 977 1027 - -
Vra1g1532 1117 SUPERFAMILY RCC1/BLIP-II 234 623 IPR009091 -
Vra1g1532 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Vra1g1532 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Vra1g1532 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1098 - -
Vra1g1532 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 695 IPR013083 -
Vra1g1532 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 295 IPR000408 -
Vra1g1532 1117 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
Vra1g1532 1117 MobiDBLite consensus disorder prediction 915 943 - -
Vra1g1532 1117 Pfam FYVE zinc finger 622 687 IPR000306 GO:0046872
Vra1g1532 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Vra1g1532 1117 MobiDBLite consensus disorder prediction 1093 1117 - -
Vra1g1532 1117 MobiDBLite consensus disorder prediction 153 206 - -
Vra1g1532 1117 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vra1g1532 1117 Gene3D - 189 452 IPR009091 -
Vra1g1532 1117 MobiDBLite consensus disorder prediction 926 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1532 Vra-Chr1 25178613 25188032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1532 1038 1108 Major Intrinsic Protein MIP AT1G31880 51.389 5.40e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1532 - - gmx:100805364 1970.28