Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1515 ATGGCCGCTTCCACCATGGCTCTCTCTTCACCGTCACTGGCTGGTCAAGCCATAAAGCTGTCTCCTTCCACCCCGGAGCTCTCCGGTGGAAGGATTTCGATGAGGAAGGCGGCCTCCAAGTCGGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTGAAGTACCTGGGCCCATTCTCGGGTGAGGCTCCTTCTTACCTGACGGGGGAATTCCCAGGTGACTATGGGTGGGACACTGCCGGGCTTTCGGCTGACCCGGAGACATTTGCTCGGAACCGTGAACTGGAAGTGATCCACTCTCGATGGGCGATGTTGGGGGCTTTGGGGTGTGTGTTCCCTGAACTGTTGGCCCGGAACGGTGTGAAGTTCGGGGAGGCGGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACCCGGGTGGGAGCTTCGACCCATTGGGCCTTGCCGATGACCCAGAGGCCTTTGCTGAATTGAAGGTGAAAGAGTTGAAAAATGGGAGATTGGCCATGTTCTCCATATTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGACCTTTGGAGAACCTCGCCGATCACCTTGCCGACCCTGTCAACAACAACGCCTGGGCCTACGCCACCAACTTTGTCCCTGGAAAGTAA 795 0.5686 MAASTMALSSPSLAGQAIKLSPSTPELSGGRISMRKAASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1515 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vra1g1515 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Vra1g1515 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vra1g1515 264 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC 1 264 - -
Vra1g1515 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1515 Vra-Chr1 24461287 24462210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1515 1 264 Chloroplast and Mitochondria Gene Families AT2G34430 88.722 6.68e-173 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1515 K08912 - ccaj:109815895 527.709