Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1506 ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATGACGGTGGTGAGGGTGAATATGGTCATGGACATGGTGATGGTAGTGGTGGTTCACCAGGCTTCAATTTTAACCAAGGGATGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGACAAATGGTTTCAGCTTTGACACACGTTGTTTCGTCAGGGTCTGACCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCCATGATGTCAGGTTTCGGACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTCCAAGACTCTTCAGAACAACAGTTCCTGACTTCGTGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGTTCCCACCTCCACAACTACAACAGTAACAGTAACAGCAGCAGCAGCAACTGCTGTTACTGAAACTACGGCTGGAGATGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCAGCACGAGTTTGGCTTGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGACGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGAGCAGTTCCACCTCTTCAACCTTTCCATCCCGCCACAAGACTAACCGTTTCTGACTCCTCCACCACACAATTCCGACCACTCACCACGGCCATGGCGGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCAGCCTCAGCTTCATCAACAACAACAACCACAACCTTCTAGTTTGCTTCAGCAGTTCTACTACAATGCACAATTGGCTTCTCTTCAATCACCTTCATTATTACCCTCATCACCTTCATTCTCTTCTTCTGTGTCACAAACTCCATTCCCTTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGTTATTTCCAGCCACTGGAAAGCCTCCCTCCAGCCGGCGGCAGGCCGGAGATTCCGCCGTCAACATGGTCCGATACCGGTGGCCAGCCACCACCTTCCGGTTGA 1335 0.4839 MSLLTVAYQRGSGEFIRFTADDGGEGEYGHGHGDGSGGSPGFNFNQGMQQQGEVTMQGGSLVSGYNRGDPELRQMVSALTHVVSSGSDQRSTEWMQQSGYPMMSGFGHAPSLSRLSSFSSSPSPSSGVGQKRGREEQETNTSSSHNLMQQQTAPRLFRTTVPDFVLPSQGDSSSVTEEVPTSTTTTVTVTAAAATAVTETTAGDGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPLQPFHPATRLTVSDSSTTQFRPLTTAMAAPPFIQPPNMQSSSDLIRDYLQYSQLLQSDFQQQHHQPQLHQQQQPQPSSLLQQFYYNAQLASLQSPSLLPSSPSFSSSVSQTPFPLFSTSPQFSSASFPMFSSQQMSYFQPLESLPPAGGRPEIPPSTWSDTGGQPPPSG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1506 444 MobiDBLite consensus disorder prediction 105 151 - -
Vra1g1506 444 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 70 409 - -
Vra1g1506 444 Gene3D AP2/ERF domain 209 269 IPR036955 GO:0003700|GO:0006355
Vra1g1506 444 SUPERFAMILY DNA-binding domain 210 268 IPR016177 GO:0003677
Vra1g1506 444 PRINTS Ethylene responsive element binding protein signature 211 222 IPR001471 GO:0003700|GO:0006355
Vra1g1506 444 PRINTS Ethylene responsive element binding protein signature 233 249 IPR001471 GO:0003700|GO:0006355
Vra1g1506 444 SMART rav1_2 210 273 IPR001471 GO:0003700|GO:0006355
Vra1g1506 444 MobiDBLite consensus disorder prediction 413 444 - -
Vra1g1506 444 MobiDBLite consensus disorder prediction 110 130 - -
Vra1g1506 444 ProSiteProfiles AP2/ERF domain profile. 210 267 IPR001471 GO:0003700|GO:0006355
Vra1g1506 444 Pfam AP2 domain 210 259 IPR001471 GO:0003700|GO:0006355
Vra1g1506 444 PANTHER DNA-BINDING DOMAIN 70 409 IPR044808 GO:0003700|GO:0009873
Vra1g1506 444 CDD AP2 210 269 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1506 Vra-Chr1 24115896 24118302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1506 207 274 AP2-EREBP Transcription Factor Family AT2G33710 77.941 5.30e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra1g1506 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1506 - - vun:114180418 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1506 1 24115896 24118302 Vra8g2117 8 38957603 38959290 PCT