Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1501 ATGGACACTGGTCCAGAAAACGTCCATGTGGCTGAGGAAGGAAATGACGAATTTAATACAGCTGATGATAGTTGTTTGGACTTGGTTCCCAGCTTGGACATGTGTTTTGACACAATGGAAGAAGCAAAGACATTTTACTCAGACTATGGAAAAAGAAGTGGTTTTGGTGTGCGAACTAGAACTTCCAAAAAAGACAAGAATAACGAAGTCTACTATTTGAGATTGGTTTGTTCAAGGGAAGGTAAATATGTTTCTAGCATTCGTCCAGAAGTGAAAACTCTGCCAACTCAGTATAATCAATGCCCTGCTGGAATAACAATTTCCCGTAAAGATGAAAAATGGTTTGTAAGGAAAGTAGCTCTACAACACAGTCATGACCTTTGTCCACAAACCTCCAATCTAATCCGTGGAAATAGAAAGTTGAAAATGCATGCAAAGCACACATTGGAAGTGAATGATATTGCGGGTGTGCGCATTAATAAAAGTTATCTTACCATAGTTGGTGAAGCTGGTGGATACGAAAATATGCAATTTATGGAGCGAGATGTTAGGAACTTTATCGATCAACAAAGAAGGTCGCTGTGTAAGGAGAGTGACGGTCAAGCGTTGTTACGTCACTTTTCAAAAATGAGAGACCTCAATAATGATTTTTTCTATGACATAGAAATGGATGAATGTAATAGAATTACTAGTGTATTTTGGGCAGATGCTCGAAGCCGAGCTGCATGTCAGGAATTTGGTGATGTCGTTTCTTTTGATACAACGTACTTAACAAACAAGTACGACATGTCTTTTGCTCCATTTGTAGGCGTTAACCATCATGGACAATCCATTCTACTTGGTTGCGGATTGCTCTCATTTGAGGACACATCATCCTTTGTTTGGTTATTCGAATGTTGGCTAAGATGCATGGAAAACAACGCGCCTGACAGTATTGTAACAGATCAATGTAAGGCCATGGCAAATGCAATTCAAGAGGTCTTCCCGAAAACAAAGCACAAATGGTGTTTGTGGCACATAATGAAAAAGATACCTGAAAAATTTCAAGGATATAAAAATTATGTTGGTATCAAAAGTGATATCAAAGTGTTTGTCTATGACTACAGTAGTACAGTGAACTTTGAAATTGGTTGGGAAAAACTACTTTCTAAACATGGCTTAGAAAATAATGAATGGCTTTGCAATCTATATGAAGACAGAGAAAAATGGGTCCCTTGTTATTTGAAGAATCACTTTTGGGCCGGTATGTCTACAACTCAAAGAAGTGAGGGTATGAATGCTTTCTTTGATGGATTTATTAATTCTAGTACCACACTTCACGAGTTTGTCATTCAGTACGATAATGCTCTTAAATTCAAAGCACAAAAAGAAATAGAAGTCGACTTCTCCTCTTTGAATACCACGGTTGCATGTGGGTCTCAATCACCAATTGAGAGACAGTTTCAAGATGAGTACACACATGCAAAATTTGAGGAAGTACAAATGGAGTTTCGGTCTAGGATGAACTGCTTCATCAAAGACACTGTCATGGACGGTAATTATATTAAGTACACTATAAAAGAAGAATGCATGTCAGATGGAAAATGTTCTACAAATATTACCATGTTGAATTTGACCCTCTTACACACGATACAAGTTTCTCGTGCCTACTGTTTGAGTTTAGAGGCATCTTTTGTCGTCATTCCCTATTGGTTCTCGGTCAGCAAGATGTACATAAAGTCCCCTCCAAATATGTTCTTAGACGTTGGAGCAAAAACATCCGAAGGAAGCACACAGTTATTAGAGCAGCTTACAGTTCTATACAGCAGGAACCCAAGATGCAAAGATATCAGTCGTTGTGTAAGCGATTCTATGATATACCTGAGGCTGCATGTGAATCTGAATGTGCTTCAGCTGACTTGGAAAAAGAATTAA 1914 0.3824 MDTGPENVHVAEEGNDEFNTADDSCLDLVPSLDMCFDTMEEAKTFYSDYGKRSGFGVRTRTSKKDKNNEVYYLRLVCSREGKYVSSIRPEVKTLPTQYNQCPAGITISRKDEKWFVRKVALQHSHDLCPQTSNLIRGNRKLKMHAKHTLEVNDIAGVRINKSYLTIVGEAGGYENMQFMERDVRNFIDQQRRSLCKESDGQALLRHFSKMRDLNNDFFYDIEMDECNRITSVFWADARSRAACQEFGDVVSFDTTYLTNKYDMSFAPFVGVNHHGQSILLGCGLLSFEDTSSFVWLFECWLRCMENNAPDSIVTDQCKAMANAIQEVFPKTKHKWCLWHIMKKIPEKFQGYKNYVGIKSDIKVFVYDYSSTVNFEIGWEKLLSKHGLENNEWLCNLYEDREKWVPCYLKNHFWAGMSTTQRSEGMNAFFDGFINSSTTLHEFVIQYDNALKFKAQKEIEVDFSSLNTTVACGSQSPIERQFQDEYTHAKFEEVQMEFRSRMNCFIKDTVMDGNYIKYTIKEECMSDGKCSTNITMLNLTLLHTIQVSRAYCLSLEASFVVIPYWFSVSKMYIKSPPNMFLDVGAKTSEGSTQLLEQLTVLYSRNPRCKDISRCVSDSMIYLRLHVNLNVLQLTWKKN* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1501 637 PANTHER OS03G0843700 PROTEIN 13 558 - -
Vra1g1501 637 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 558 IPR031052 GO:0006355
Vra1g1501 637 Pfam FAR1 DNA-binding domain 44 128 IPR004330 -
Vra1g1501 637 Pfam MULE transposase domain 249 343 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1501 Vra-Chr1 24023398 24025311 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra1g1501 MULE 7.9e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1501 - - var:108341250 889.026