Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1497 ATGGCTAGGGTTTGTTCTTTGTTTCATTCATTGGTGTTGGTTTGTTCCCTTTTATTTGCTTCTGAAACCCTTGTCTTCTCTAGGATATTGGAAAAAAGACCACCCCTTGTCCCAGGACTATCGTGGAATTACTATTTTCCTTTAGAATGTCCGACTCTTGAATGGATTATAAGGACTAATTTGGAGAAAGCATTCAAGAACGACAGTGGATTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTGCCAATGGTTGTGACGCCTCCATATTGCTGAATGCACCAGATGGAAACGATGAAAAGAGCCACCCTGCTAACATTGGTATAAGGCAAGAGGCTCTTCTCGCCATTGAAGAGCTTCGACGTGTCATTTACAAGCAGTGTCTGCCAGTTGTTTCATGTTCAGACATCCTTGTCGTTGCAGCACGTGAAGCTGTTCGCCAAATGGGAGGCCCAGATTTTGATGTGCCTCTGGGAAGGAAAGACAGCCTCACGTTCGACCTAGACGGACCCAACAACCTCCCGCCGCCATTCTTCCGAACCGAACAGCTGCTGGAAGTCTTTGGCCAGCGAAACTTCGACGCCACCGACGTTGTCGCCCTCTCCGGAGCCCACACGTACGGTAGGGCTCACTGCTCCTCTTTAGTCAACAGAACAATCGAATCTGACCCACCCATTGACCCGGACTTCAAGAACAACTTGGTGGCAACGTGTCCCACGCCCCAGTCCTCGAACACTGTGAACCTGGACGTGCGCACCCCGGCCAAGTTCGACAACATGTACTACATCAACCTGTTGAACCAGCAGGGTGTTTTCACCTCGGACCAGGACCTCGCGAGCCACCCCCAGACGAAGGAGATCGTGAACCTGTTCGCCTCCAACCAGAAGGAGTTCTTCGATAGTTTCGCGGACGCGTTTGTGAAGGTGAGTCAGATCGACGTCATTACCAACCGTCAAGGGAAAGGGGAGATTCGCGACAGGTGCTTCGTAGCCAATAAGAAGGTTTCGGTGGAGGCTGTGGCGGAGGAAATGATGGAGCTGGCGGAGGCCATCTGA 1062 0.5113 MARVCSLFHSLVLVCSLLFASETLVFSRILEKRPPLVPGLSWNYYFPLECPTLEWIIRTNLEKAFKNDSGLAPGILRLFFHDCFANGCDASILLNAPDGNDEKSHPANIGIRQEALLAIEELRRVIYKQCLPVVSCSDILVVAAREAVRQMGGPDFDVPLGRKDSLTFDLDGPNNLPPPFFRTEQLLEVFGQRNFDATDVVALSGAHTYGRAHCSSLVNRTIESDPPIDPDFKNNLVATCPTPQSSNTVNLDVRTPAKFDNMYYINLLNQQGVFTSDQDLASHPQTKEIVNLFASNQKEFFDSFADAFVKVSQIDVITNRQGKGEIRDRCFVANKKVSVEAVAEEMMELAEAI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1497 353 SUPERFAMILY Heme-dependent peroxidases 9 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 Pfam Peroxidase 58 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601
Vra1g1497 353 ProSitePatterns Peroxidases proximal heme-ligand signature. 199 209 IPR019793 -
Vra1g1497 353 PANTHER PEROXIDASE 25-RELATED 25 338 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 Gene3D - 45 330 - -
Vra1g1497 353 ProSiteProfiles Plant heme peroxidase family profile. 39 334 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Haem peroxidase superfamily signature 134 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Haem peroxidase superfamily signature 152 164 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 133 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 152 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 198 210 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g1497 353 PANTHER PEROXIDASE FAMILY PROTEIN 25 338 - -
Vra1g1497 353 CDD secretory_peroxidase 39 332 IPR033905 GO:0004601|GO:0042744
Vra1g1497 353 Gene3D Peroxidase, domain 2 178 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1497 Vra-Chr1 23944219 23945893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1497 35 353 Peroxidase AT1G71695 50.464 1.27e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1497 K00430 - gmx:100795412 479.174