Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1492 ATGTGCACAGCCAGCTACAGGAAGATGTTATTGCTGCAACAAGATGAGTTGAAAATGCAGAAGCAGCTGCCATCTGATGAGAAAGAGCTGATGCTGCTAGAACAAATGGTTGAGCAAGAGGAAGACCGTGCATGGAGGGAGACTCTGCACAGAGGAGCTGGGCATAATGGAGAAAAACTAAATGATGGGGAGTATTCTCAGGTGGTTTCAAATGCACTGGATATAAAGTTGAGGGATGATTTGGAGTGGTTGAAGAAAATCAGAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTGTGTTCGAGGATAGCATACCAAGACAACTGGTCGCAGGGGTAAAACTGTTGGTGTGTCTAAGAAGCGTTAAGCAGTTCAATTTTTGCTATGAGGATTGA 396 0.4495 MCTASYRKMLLLQQDELKMQKQLPSDEKELMLLEQMVEQEEDRAWRETLHRGAGHNGEKLNDGEYSQVVSNALDIKLRDDLEWLKKIRNHRGLRHYWGLVFEDSIPRQLVAGVKLLVCLRSVKQFNFCYED* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1492 131 Gene3D 30s ribosomal protein s13, domain 2 62 101 IPR027437 -
Vra1g1492 131 Coils Coil 23 43 - -
Vra1g1492 131 ProSiteProfiles Ribosomal protein S13 family profile. 27 99 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra1g1492 131 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 62 99 - -
Vra1g1492 131 Pfam Ribosomal protein S13/S18 16 99 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra1g1492 131 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 62 99 - -
Vra1g1492 131 SUPERFAMILY S13-like H2TH domain 58 99 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1492 Vra-Chr1 23314794 23325919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1492 62 99 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 92.105 1.76e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1492 K02964 - jre:109011389 76.6405