Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1485 ATGCAACACCAACTTGATGCTATTAGCAAACGGTTGGACACAGAGGCAAAGGCCAAAGGAAAGCAATCTCATGGTCATGATCATGGCTCTTCCAAGAAAAATCAAGAAGACAAAGCTTTGGATCCAAACCTTGCAATGCTAAAGTTGACTTTGCCAAGTTTCAAGGGAGAGGCCGATCCTAGTGTATTTTTAAATTGGATAGCTAAAGTAGACCACATTTTTGACTTGTATAGTGTAAAAGGACATTTGCGTGAAAAGTTAGTTTGTTTAGCTTTAGAGGGACAAGCCAAACAATGGCTACGTAGGAGATACTTAATCATGGCCTCACCCGCGAGTACATGGGAACATTTTAGGGACATTTCATACGAATGTTTCGTACCTCCATACTACCATAGGGACCTCTTGATTAAGTTCCAACAACTTACTCAAGATAGACGAAGTGTGGAGGAGTATGCTCGCGAGCTCGAAGTGCTCCTACATTGTGCTAACCTTAAAGAAAATAATCATGAAAAAATAGTTAGATTTATTAGTGGACTTAATAGCAACATCCAAGATATAATTGAATTCCATGATGATGAGACTTTAGATGTAGTGGTTCGTAGAGCCATGAAAGTAGAGAAGAAACTCTTGAAAAAAGAAGCGTGTCACAACAAAATTTCCAAATCTTCAAGAGGTGTTTTCTACAAATCCTCATCATCAAAGGATAAAACCAAGGATGTTTCTAAGGAGGCCATTAACAAATCTTCTTCTAACCATTCCTCCTCCCCACCTAAATCTTCTTTTAGACCAAGTCACATTAAATTTTTTAAGTGCTTAGGTCATGGTCACATTGCATTTGCATGCCCAAACAAGAGGGCAATGTGCATTCGAGGAGAAGAGGTTGTCACCGATGACTCTCCTCCTTCTTCACCTTCACACACTTCTCACTCTTCTTCTTCCTCTAGTGAAGATGAGTACAAGGTTTCATTTGATGGCGACCTACTAGTTATAAGACGTCTCTTGGGTCAAGTCCACAAGGACTTTGACACAACTCAAAGAGAAAATATTTTTCACACTAGATGTCTTATAGCTAGCAAGGTTTGCTCCATGATCATAGCCAAGGGAAGTTGCACTAATGTGGCTAGCACACGCGTAGTGGACAAGCTCAAGCTACCCACCATAGCACATGCCAAGCCCTACAAACTTCAATGGCTAAGTGAGGAGGGTGAAATCTTGGTAAAAAAGAAAGTGCATATTTCCTTTTCTATTAGCAAGTATCAAGATGAGGTTCTTTGTGATGTTGTACCCATGGAAGCAACTCACATTTTATTAGGAAGACCATGGCAATTTGATAGAAATGTTCAACATGATGGTCTTACTAATAGAATGTCTTTTACTTACCAAGGGTGCAAGTATGAAGAAGCTGAGTGGTATTGGTTTGCTTTTATTTCATACTCTATCAAGAAATTGATCCACAAAAATGAGGAGGCCGGAAAGGAAGAGAATGTGAATTCCAGGCTTAGCTTGTGTCTTATATTGAGAGCCGCTAAGCTCAACATTACAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGCAACATATATGGAACATATTGGGAAAACAAGCTGGAGGCGAAGGAGATACATGCCAATGTTATTCACTTAAAGATTCTTAGCAAACCTTTTGTGTACATTTCTTTGATTTATATCTAA 1713 0.3911 MQHQLDAISKRLDTEAKAKGKQSHGHDHGSSKKNQEDKALDPNLAMLKLTLPSFKGEADPSVFLNWIAKVDHIFDLYSVKGHLREKLVCLALEGQAKQWLRRRYLIMASPASTWEHFRDISYECFVPPYYHRDLLIKFQQLTQDRRSVEEYARELEVLLHCANLKENNHEKIVRFISGLNSNIQDIIEFHDDETLDVVVRRAMKVEKKLLKKEACHNKISKSSRGVFYKSSSSKDKTKDVSKEAINKSSSNHSSSPPKSSFRPSHIKFFKCLGHGHIAFACPNKRAMCIRGEEVVTDDSPPSSPSHTSHSSSSSSEDEYKVSFDGDLLVIRRLLGQVHKDFDTTQRENIFHTRCLIASKVCSMIIAKGSCTNVASTRVVDKLKLPTIAHAKPYKLQWLSEEGEILVKKKVHISFSISKYQDEVLCDVVPMEATHILLGRPWQFDRNVQHDGLTNRMSFTYQGCKYEEAEWYWFAFISYSIKKLIHKNEEAGKEENVNSRLSLCLILRAAKLNITDFFKELPQFVVKAGPTLSNIYGTYWENKLEAKEIHANVIHLKILSKPFVYISLIYI* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1485 570 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 13 446 - -
Vra1g1485 570 MobiDBLite consensus disorder prediction 229 261 - -
Vra1g1485 570 MobiDBLite consensus disorder prediction 298 318 - -
Vra1g1485 570 MobiDBLite consensus disorder prediction 13 37 - -
Vra1g1485 570 CDD retropepsin_like 352 441 - -
Vra1g1485 570 Pfam Domain of unknown function (DUF3452) 497 562 IPR024599 -
Vra1g1485 570 Gene3D Acid Proteases 334 466 IPR021109 -
Vra1g1485 570 MobiDBLite consensus disorder prediction 294 318 - -
Vra1g1485 570 MobiDBLite consensus disorder prediction 246 261 - -
Vra1g1485 570 Pfam Retrotransposon gag protein 87 180 IPR005162 -
Vra1g1485 570 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 13 446 - -
Vra1g1485 570 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1485 Vra-Chr1 23151560 23155650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1485 452 560 Core Cell Cycle Gene Families AT3G12280 54.128 4.83e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1485 - - vra:106759714 1098.96