Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1481 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTACGAGTGGCTTGATCCCTCCATAAAGAAGACTGAGTGGACTAGGGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTCATGCCCACTCAGTGGAGAACAATTGCTCCAATTGTAGGTCGTACACCTTCTCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTAAAAGATGAGAANTATGAGCCTGGTGATGATCCTCGAAAATTGCGTCCTGGGGAGATTGATCCAAACCCCGAGTCAAAACCTGCACGGCCTGATCCTGTTGATATGGATGAGGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGATTAGCCAACACAAAGGGAAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCCCTACAAAAGAAGAGGGAATTGAAGGCGGCTGGAATTGATATCAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGACTACAATGCAGAAATTCCATTTGAGAAAAGGCCTCCTCCAGGGTTTTTCGATGTTGCAGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGGGAAAAGGAGGGTTGATATTGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATATTACATGCCAACAAATTGAATGATCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCACCCCAGATATCTGATCAAGAATTGGATGAAATTGCTAAGTTGGGTTATGCTAGTGACCTTGCAGGGAGTCAAGAACTTACTGAAGGTAGTGGTGCAACACGTGCTCTTCTGGCTAATTATGCACAGACACCCGGTCAAGGAGTGACTCCTTTGCGAACCCCTCAGAGAACACCATCTGGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATCTTGCCAGGTTGAGGGAGTCTCAAACACCATTGTTGGGAGGAGAGAATCCAGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCAAAGAAAAAAGACATTCAGACTCCAAATCCAATGCTGACCCCATCTGCTACTCCTGGAGGTGCAGGCCTCACTCCAAGAGTTGGTATGACACCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGGACTCCTTTGAGGGATGAACTACGTATTAATGAGGACATGAATATGCATGANAGCACTAAACGTGAGCTGCAGAGACAGGCTGATATNAGAAGAAGTCTGCGTTCTGGTTTAGGAAGCCTTCCTCAGCCCAAGAATGAGTACCAAATAGTGATGGAACCAGTCACAGAAGATGCCGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGACAGGATAGCTAGAGAAAAAGCAGAAGAGGAGGCAAGACAGCAGGCATTACTTAGAAAACGATCAAAGGTCCTTCAACGAGAACTTCCTAGGCCCCCTGCTGCTTCATTGGAGCTTATAAGAAATTCCTTAATTAGATCTGATGGGGACAAGAGTTCCTTTGTTCCACCAACGTCTATTGAGCAGGCTGATGAAATGATTAGAAAGGAGCTTCTAACTTTATTGGAGCATGACAATGCCAAGTATCCGCTTGATGATAAAGTGAATAAGGAGAAAAAGAAAGGAGTCAAGCGATCTACAGATTTGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAAGTCCAATATCTTTGTGCCGCAATGGGACATGAAAATGAGCCCCTTGATGAATTTATTGAAGCACATCGAACCTGCCTCAATGATCTTATGTACTTTCCTACTCGTAATGCATATGGTCTCTCCAGTGTTGCTGGGAACATGGAAAAACTAGCTGCTTTGCAAAATGAATTTGAGAATGTGAGAAAGAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGACTGTTATCACTCAAGGCTACGAGATGAGAGCAAAGAAAAGTATCTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGATATAGCTGCAACCGAGTTAGAATGCTTTAAAGCTTTGCAAAATCAGGAGCAGTTAGCAGCATCNCACAGGATAAACAATTTGTGGAGTGAAGTACAGAAGCAAAAGGAACTTGAAAAAACTTTGCAAAACAGGTACGGGAGTCTAATTGAAGAGCTGGAGAAGATGCAAAATATCATGAACCAATGCAGATTAAAGGCAGAGCAGCAAAAAGAAATTGAAGCAAACAATGCTCATGCTGAGACCAATGAGACCAAGGTCAATGAAACTGATGTGCAGGATACAGGGAGTGTTGTACCTCACTCAGCAGAGGATGGAAATGCTCAAGCAATAACAGTCGAGTCATCACATGATGGAACTTCTGAACAGCAAGTTGAGATTGTGCAAGACCAGTCTACTTCTAGCCCTAGCCATGACATGAATGTGGATTCTGATAACATGCATACAATACATGACAGTGATGTTAAATTAGCAAATGCTTCACCAGCTGCTGAGAATGTTGTTGAAAAAGTGGGAGGTAGTGGCCCTACTGATGGTTATACTGACAATGGGGAGAACGTGTCAGAAATGGGTGCTTCAATGGAAATAAATAGCCCTAATCAAGATGTAGTTGCGAATGCTGTAACCACACGGGAGAGCAGCGTGGAAGAAACCAATGCTGTCACGGAGGAGACAAATTAG 2910 0.4357 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDEXYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELTEGSGATRALLANYAQTPGQGVTPLRTPQRTPSGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKDIQTPNPMLTPSATPGGAGLTPRVGMTPTRDGFSFSMTPKGTPLRDELRINEDMNMHXSTKRELQRQADXRRSLRSGLGSLPQPKNEYQIVMEPVTEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLIRSDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDDKVNKEKKKGVKRSTDLSAVPVIEDFEEDEMKDADKLIKEEVQYLCAAMGHENEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRKKLDDDKEKMVRLEKKVTVITQGYEMRAKKSIWPQIEATFKQMDIAATELECFKALQNQEQLAASHRINNLWSEVQKQKELEKTLQNRYGSLIEELEKMQNIMNQCRLKAEQQKEIEANNAHAETNETKVNETDVQDTGSVVPHSAEDGNAQAITVESSHDGTSEQQVEIVQDQSTSSPSHDMNVDSDNMHTIHDSDVKLANASPAAENVVEKVGGSGPTDGYTDNGENVSEMGASMEINSPNQDVVANAVTTRESSVEETNAVTEETN* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1481 969 MobiDBLite consensus disorder prediction 113 149 - -
Vra1g1481 969 MobiDBLite consensus disorder prediction 399 413 - -
Vra1g1481 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Vra1g1481 969 Coils Coil 682 716 - -
Vra1g1481 969 Coils Coil 167 187 - -
Vra1g1481 969 Pfam Myb-like DNA-binding domain 10 70 - -
Vra1g1481 969 SMART sant 6 55 IPR001005 -
Vra1g1481 969 SMART sant 58 105 IPR001005 -
Vra1g1481 969 MobiDBLite consensus disorder prediction 832 886 - -
Vra1g1481 969 MobiDBLite consensus disorder prediction 447 472 - -
Vra1g1481 969 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Vra1g1481 969 MobiDBLite consensus disorder prediction 922 944 - -
Vra1g1481 969 CDD SANT 10 53 IPR001005 -
Vra1g1481 969 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Vra1g1481 969 CDD SANT_CDC5_II 55 106 - -
Vra1g1481 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Vra1g1481 969 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Vra1g1481 969 Gene3D - 60 114 - -
Vra1g1481 969 Coils Coil 782 816 - -
Vra1g1481 969 MobiDBLite consensus disorder prediction 342 523 - -
Vra1g1481 969 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 798 - -
Vra1g1481 969 MobiDBLite consensus disorder prediction 813 890 - -
Vra1g1481 969 MobiDBLite consensus disorder prediction 813 831 - -
Vra1g1481 969 MobiDBLite consensus disorder prediction 912 944 - -
Vra1g1481 969 Gene3D - 5 59 - -
Vra1g1481 969 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1481 Vra-Chr1 23033181 23039249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1481 1 835 MYB-Related Transcription Factor Family AT1G09770 76.520 0.0 1256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g1481 Myb_Cef 3.4e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1481 K12860 - gmx:100801352 1595.87