Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1472 ATGGATTTTACTGCGGAGAAGAAGGAATCAGAGAACAACAGCGCTAATAACCCCGAAAACGCTCATCAAACGTTAGATTCTTCTTCTCCTCAATTGGCGTCGGCACTTGATTCAAGCAGCAAAGAAACCGAAGAACGACAATCTCGTGAACTCAAAGCTGGTCTTCACCCTCTGAAGAACAAATTTGTTTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAACCAGACCTCATACGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTATTGCCATCTTGCCCGGCCTGCTTCTTTGCCTAGTCCCACAGATTTGCACCTTTTCAAGGAAGGAATTCGCCCTTTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCGGGTCGGTTTTGGGAGGACCTGGTTCTTGCCTTAGTGGGTGACCAATTGGATTATGGGGATAACATATGCGGTGCAGTACTAAGCATTCGTTTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGGCTGTAATGGCCCTGAGAGATTCAATCAAACGTCACTTGAAGCTTCCTCACAGCTATGTTATGGAGTACAAACCCCATGACGCCTCTCTGCGAGACAATTCATCCTACAGGAACACTTGGTTGAGAGGGTAG 708 0.452 MDFTAEKKESENNSANNPENAHQTLDSSSPQLASALDSSSKETEERQSRELKAGLHPLKNKFVFWYTRRTPGVRNQTSYEDNIKKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1472 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 40 235 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vra1g1472 235 MobiDBLite consensus disorder prediction 1 51 - -
Vra1g1472 235 ProSitePatterns Eukaryotic initiation factor 4E signature. 113 136 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Vra1g1472 235 Pfam Eukaryotic initiation factor 4E 57 215 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vra1g1472 235 SUPERFAMILY eIF4e-like 43 231 IPR023398 -
Vra1g1472 235 Gene3D RNA Cap, Translation Initiation Factor Eif4e 29 228 IPR023398 -
Vra1g1472 235 PANTHER BNAA10G16710D PROTEIN 40 235 - -
Vra1g1472 235 MobiDBLite consensus disorder prediction 14 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1472 Vra-Chr1 22753639 22756569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1472 43 235 Eukaryotic Initiation Factors Gene Family AT5G18110 86.528 1.99e-127 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1472 K03259 - gmx:100499744 441.039