Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra1g1469 | ATGAACGACCTTCTAACGGAATCATTTGAAATCCCACGTCACAGAGGTGGTGACATTGAGTTAGGAGAATATGCGAGGAATTCAGGAGAACTGGGCTTGGAAAGTTTCTTCAGAAAGGTCCAAGAGCTGGATAAGCATTATGCTAAGCTGGATAAGCTTTTGAGGAAGCTTCAGGATGCCCGTGAGGAAGCCAAAGTTGTGACTAAGGCTTCTTCCATGAAGGCTATAAAGGAGAAAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCATATTACATAAAGTCCAGAATTGAAGAATTGGACAAAGAGAATTTGACGAACAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGGTGTTGACCGCTCAAGAACAGCAACAACCATTTCTTTAAAAAAGAAACTGAAGGATAAAATGGCAGAATTTCAGACCCTAAGAGAGGTCATCCATCAAGAGTATCGTGAGGTTGTTGAGAGAAGAGTTTTTACAGTTACAGGCACAAGAGCCGATGAGGAGACAATCGACAGATTAATAGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTCAGAGATGTTGAGAAAAAGCTTCTTGATCTACAACAGATATTTCTGGATATTGCGGTGTTAGTGGATGCACAAGGAGAAATGCTTGACAACATTGAAACACAGGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGTAACAATGCCCTTGTTAAAGCCAAGAAACTTCAAAAGAACTCCAGAAAATGGATGTGTGTTGCAATCTTGATACTTCTCATTTTTATTATAATCATCGTTGTCTCTGTCATCAAACCATGGGTTCACAAAAATGGTGCATAA | 915 | 0.4087 | MNDLLTESFEIPRHRGGDIELGEYARNSGELGLESFFRKVQELDKHYAKLDKLLRKLQDAREEAKVVTKASSMKAIKEKMEKDVDEVKKTAYYIKSRIEELDKENLTNRQKPGCGKGSGVDRSRTATTISLKKKLKDKMAEFQTLREVIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVEKKLLDLQQIFLDIAVLVDAQGEMLDNIETQVSSAVDHVQQGNNALVKAKKLQKNSRKWMCVAILILLIFIIIIVVSVIKPWVHKNGA* | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra1g1469 | 304 | PANTHER | SYNTAXIN | 6 | 296 | IPR045242 | - | |
Vra1g1469 | 304 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Vra1g1469 | 304 | Pfam | SNARE domain | 239 | 291 | IPR000727 | - | |
Vra1g1469 | 304 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Vra1g1469 | 304 | PANTHER | - | 6 | 296 | - | - | |
Vra1g1469 | 304 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
Vra1g1469 | 304 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Vra1g1469 | 304 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Vra1g1469 | 304 | Gene3D | - | 194 | 296 | - | - | |
Vra1g1469 | 304 | Coils | Coil | 40 | 90 | - | - | |
Vra1g1469 | 304 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
Vra1g1469 | 304 | Gene3D | - | 31 | 157 | - | - | |
Vra1g1469 | 304 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Vra1g1469 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra1g1469 | Vra-Chr1 | 22720864 | 22732439 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra1g1469 | 1 | 304 | SNARE and Associated Proteins | AT3G03800 | 74.510 | 9.95e-158 | 441 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra1g1469 | K08486 | - | gmx:100306329 | 512.686 |