Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1463 ATGGCTAAGCATGATGTTGAGGGTGGTTCCTTCTCTGCAAAGGACTACCATGACCCTCCTCCAGCACCCTTGATTGATGGTGAGGAACTCACACAGTGGTCCTTCTACAGGGCCTTGATTGCTGAGTTCATTGCCACACTTCTCTTCCTTTACATCACAGTGCTCACTGTTATTGGTTACAAGAGCCAGAGTGATGTAAACGCTGGGGGTGATCTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACTTTTGGACTGTTCTTGGCTCGGAAGGTGTCTTTGATAAGGGCTATAATGTACATGGTGGCTCAGTGTTTGGGGGCCATATGTGGAGTTGGGTTGGTGAAGGCCTTCCAAAAGGCTTACTACCACAGGTATGGTGGTGGGGCCAATGAGTTGAGTGAAGGGTACAGCACAGGTGTTGGATTGGGTGCAGAGATCATTGGAACATTCGTTTTGGTGTACACTGTCTTCTCTGCTACAGACCCCAAGAGGAATGCTAGAGATTCTCATGTCCCGGTTTTGGCTCCACTTCCAATTGGTTTTGCTGTGTTCATGGTCCACTTGGCAACCATCCCTGTAACTGGCACTGGTATTAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATATACAACAAAGAGAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCTGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCACCATTTGA 858 0.4918 MAKHDVEGGSFSAKDYHDPPPAPLIDGEELTQWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDVNAGGDLCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYHRYGGGANELSEGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKEKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPTI* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1463 285 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 SUPERFAMILY Aquaporin-like 29 269 IPR023271 -
Vra1g1463 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Vra1g1463 285 MobiDBLite consensus disorder prediction 1 20 - -
Vra1g1463 285 Pfam Major intrinsic protein 29 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 282 IPR034294 -
Vra1g1463 285 CDD MIP 37 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1463 285 PANTHER AQUAPORIN PIP2-4-RELATED 7 282 - -
Vra1g1463 285 Gene3D Glycerol uptake facilitator protein. 22 285 IPR023271 -
Vra1g1463 285 TIGRFAM MIP: MIP family channel proteins 41 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1463 Vra-Chr1 22608570 22612142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1463 1 281 Major Intrinsic Protein MIP AT2G37170 85.106 1.68e-178 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1463 K09872 - gmx:547857 561.607